WormBase Tree Display for Gene: WBGene00045419
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| WBGene00045419 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | lsy-12 | Person_evidence | WBPerson260 | |||||
| Sequence_name | R07B5.9 | ||||||||
| Molecular_name (35) | |||||||||
| Other_name | mys-3 | Person_evidence | WBPerson2693 | ||||||
| WBPerson552 | |||||||||
| WBPerson268 | |||||||||
| CELE_R07B5.9 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | lsy-12 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 18 May 2007 14:42:36 | WBPerson2970 | Event | Created | |||
| 2 | 09 Apr 2008 11:18:54 | WBPerson2970 | Event | Acquires_merge | WBGene00011086 | ||||
| Name_change | Sequence_name | R07B5.9 | |||||||
| 3 | 21 May 2010 13:42:20 | WBPerson2970 | Event | Acquires_merge | WBGene00011085 | ||||
| Name_change | Other_name | mys-3 | |||||||
| 4 | 21 May 2010 17:14:23 | WBPerson1983 | Event | Acquires_merge | WBGene00011700 | ||||
| Acquires_merge | WBGene00011085 | ||||||||
| WBGene00011086 | |||||||||
| WBGene00011700 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lsy | ||||||||
| Allele (200) | |||||||||
| Strain | WBStrain00029379 | ||||||||
| WBStrain00029380 | |||||||||
| WBStrain00029484 | |||||||||
| WBStrain00029537 | |||||||||
| WBStrain00029547 | |||||||||
| WBStrain00029584 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00007029 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007914 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010537 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00016200 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018013 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | lsy-12 encodes a histone acetyltransferase; lsy-12 is maternally required for developmental differentiation of ASEL neurons from ASERs, with lsy-12 mutants having double ASERs and no ASELs; lsy-12 is also zygotically required for normal vulval development, locomotion, egg-laying, fecundity, health, and viability of gravid hermaphrodites; lsy-12(ot171) hermaphrodites bag prematurely, are sickly, and have mildly protruding vulvae, while other lsy-12 mutants display egg-laying defects, protruding vulvae, or low brood sizes; on the basis of its phenotype, lsy-12 is expected to act in concert with CEH-36, DIE-1, LIN-49, LSY-2, and lsy-6 during the lateral specification of ASER/ASEL. | Paper_evidence | WBPaper00030973 | |||||
| WBPaper00032078 | |||||||||
| WBPaper00036201 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 25 May 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable histone H4K16 acetyltransferase activity and transcription coregulator activity. Involved in cell fate specification; maintenance of left/right asymmetry; and positive regulation of gene expression. Predicted to be part of MSL complex. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R07B5.9a | |||||||
| R07B5.9b | |||||||||
| R07B5.9c | |||||||||
| R07B5.9d | |||||||||
| R07B5.9f | |||||||||
| R07B5.9g | |||||||||
| R07B5.9h | |||||||||
| R07B5.9i | |||||||||
| R07B5.9j | |||||||||
| R07B5.9k | |||||||||
| Corresponding_CDS_history | R07B5.9:wp175 | ||||||||
| R07B5.9:wp215 | |||||||||
| R07B5.9a:wp217 | |||||||||
| R07B5.9c:wp217 | |||||||||
| R07B5.9d:wp217 | |||||||||
| R07B5.9e:wp217 | |||||||||
| R07B5.9e:wp229 | |||||||||
| Corresponding_transcript (15) | |||||||||
| Other_sequence | CJC07250_1 | ||||||||
| CR12610 | |||||||||
| CBC10948_1 | |||||||||
| JO472705.1 | |||||||||
| CRC10004_1 | |||||||||
| Associated_feature (18) | |||||||||
| Transcription_factor | WBTranscriptionFactor000786 | ||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1029108 | ||||||||
| Expr1040370 | |||||||||
| Expr1155114 | |||||||||
| Expr2013301 | |||||||||
| Expr2031532 | |||||||||
| Drives_construct | WBCnstr00023226 | ||||||||
| Construct_product | WBCnstr00021795 | ||||||||
| WBCnstr00023226 | |||||||||
| Microarray_results (67) | |||||||||
| Expression_cluster (149) | |||||||||
| Interaction | WBInteraction000046040 | ||||||||
| WBInteraction000500193 | |||||||||
| WBInteraction000500194 | |||||||||
| WBInteraction000500195 | |||||||||
| WBInteraction000539678 | |||||||||
| Map_info | Map | V | Position | 2.20105 | Error | 0.000124 | |||
| Positive | Positive_clone | R07B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
