WormBase Tree Display for Gene: WBGene00045401
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| WBGene00045401 | SMap | S_parent | Sequence | T26F2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | eol-1 | Paper_evidence | WBPaper00045830 | |||||
| Person_evidence | WBPerson1627 | ||||||||
| Sequence_name | T26F2.3 | ||||||||
| Molecular_name | T26F2.3 | ||||||||
| T26F2.3.1 | |||||||||
| CE41028 | |||||||||
| T26F2.3.2 | |||||||||
| Other_name | CELE_T26F2.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | eol-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 27 Apr 2007 09:42:00 | WBPerson4025 | Event | Split_from | WBGene00012058 | ||
| 2 | 22 Dec 2014 11:59:25 | WBPerson2970 | Name_change | CGC_name | eol-1 | ||||
| Split_from | WBGene00012058 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | eol | ||||||||
| Allele (35) | |||||||||
| Possibly_affected_by | WBVar02157243 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (50) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Concise_description | eol-1 encodes a homolog of vertebrate DXO/Dom3Z, a decapping and exoribonuclease protein that functions in pre-mRNA quality control; in C. elegans, EOL-1 activity is required in the URX sensory neurons for inhibition of olfactory learning; mouse Dom3Z can functionally substitute for C. elegans EOL-1, demonstrating conservation of activity for these proteins; in adult hermaphrodites, an eol-1::gfp promoter fusion is expressed in several head and tail neurons, including URX, AVF, and PQR, and in reproductive tissues. | Paper_evidence | WBPaper00045830 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 22 Dec 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable 5'-3' exonuclease activity; mRNA 5'-diphosphatase activity; and mRNA binding activity. Involved in regulation of olfactory learning. Predicted to be located in cytosol and nucleus. Expressed in AVF; oxygen sensory neurons; and reproductive system. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T26F2.3 | |||||||
| Corresponding_CDS_history | T26F2.3:wp195 | ||||||||
| T26F2.3:wp215 | |||||||||
| Corresponding_transcript | T26F2.3.1 | ||||||||
| T26F2.3.2 | |||||||||
| Other_sequence | CBC10792_1 | ||||||||
| Associated_feature | WBsf234889 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00054220 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019270 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12008 | ||||||||
| Expr15788 | |||||||||
| Expr1019371 | |||||||||
| Expr1157766 | |||||||||
| Expr2011336 | |||||||||
| Expr2029572 | |||||||||
| Drives_construct | WBCnstr00020068 | ||||||||
| WBCnstr00020069 | |||||||||
| WBCnstr00020070 | |||||||||
| WBCnstr00023236 | |||||||||
| Construct_product | WBCnstr00020068 | ||||||||
| WBCnstr00023236 | |||||||||
| WBCnstr00042520 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (290) | |||||||||
| Map_info | Map | V | Position | 5.86927 | |||||
| Positive | Positive_clone | T26F2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00045830 | ||||||||
| WBPaper00051856 | |||||||||
| WBPaper00060692 | |||||||||
| WBPaper00061319 | |||||||||
| WBPaper00064708 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
