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WormBase Tree Display for Gene: WBGene00033502

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Name Class

WBGene00033502SMapS_parentSequencecb25.fpc2888a2
IdentityVersion2
NameCGC_nameCbr-cof-2From_analysisInferred_from_orthology
Sequence_nameCBG12573
Molecular_nameCBG12573
CBG12573.1
CBP27516
Other_nameCBG_12573Accession_evidenceNDBHE600940
Public_nameCbr-cof-2
DB_infoDatabaseNDBlocus_tagCBG_12573
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-cof-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcof
RNASeq_FPKMWBls:00000021.88936From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
2.474From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.6762From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.85645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.2025From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2.15613From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.28278From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.281557From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.563114From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.187705From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000041.91407From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
2.80978From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
3.70549From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1.55876From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
2.33686From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
2.42686From_analysisRNASeq.briggsae.WBls:0000004.control_mean
2.6191From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.327734From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.875756From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.90497From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.51143From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.55075From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.73517From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.22575From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000354.84425From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.251116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.19272From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2.70802From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2.79799From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.88796From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.92377From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.419443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.430349From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.501809From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.573269From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.689633From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.33547From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.91673From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.18509From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.26019From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.0918From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.265906From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.743299From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.803351From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.86041From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.78683From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.831881From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.84476From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.35206From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001011.78683From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.4295From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.6728From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.37112From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
OrthologWBGene00000583Caenorhabditis elegansFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00064309Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00095724Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00160276Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00194481Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g9098Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5568Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g5569Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6198Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1570Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17590Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7690Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g3685Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13146Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g16364Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g21808Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6146Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00732.g13765Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-cof-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00420.g11103Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06978Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_002716Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01704Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4864Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10322200Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00223100Brugia malayiFrom_analysisWormBase-Compara
WBGene00268748Brugia malayiFrom_analysisWormBase-Compara
chrI_pilon.g1110Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00136809Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00178550Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00248602Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00260462Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292551Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00032956Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038898Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Olfactomedin-like domain; Collagen triple helix repeat; and Collagen triple helix repeat (20 copies). Is an ortholog of C. elegans cof-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG12573
Corresponding_CDS_historyCBG12573:bp194
Corresponding_transcriptCBG12573.1
Other_sequenceJI166496.1
JI167173.1
JI468474.1
Dviv_isotig26478
Oden_isotig21470
Experimental_infoExpr_patternExpr1058645
Microarray_resultsGPL8303_CB6_WBGene00033502_A
GPL8303_CB6_WBGene00033502_B
GPL14143_CBG12573_1203-1262_0.946_7_C
GPL14143_CBG12573_1286-1345_0.957_1_B
GPL14143_CBG12573_1402-1461_0.948_6_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene