WormBase Tree Display for Gene: WBGene00136809

WBGene00136809 SMap: S_parent: Sequence: Cjap.Contig8538
  Identity: Version: 8
    Name: CGC_name: Cjp-cof-2.1 From_analysis: Inferred_from_orthology
      Sequence_name: CJA17604
      Molecular_name: CJA17604
        CJA17604.1
        JA67006
      Public_name: Cjp-cof-2.1
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:23 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-cof-2
        2 27 Jan 2009 15:19:29 WBPerson4055 Name_change: CGC_name: Removed
        3 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
        4 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cjp-cof-2.1
        5 08 Feb 2019 15:42:29 WBPerson1983 Name_change: CGC_name: Removed
        6 08 May 2019 10:09:27 WBPerson1983 Name_change: CGC_name: Cjp-cof-2.1
        7 28 May 2021 19:05:21 WBPerson1983 Name_change: CGC_name: Removed
        8 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cjp-cof-2.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cof
    RNASeq_FPKM: WBls:0000004 1.8e-05 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 0 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 1.2e-05 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        2.4e-05 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        3.6e-05 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 0.000154 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        0.032083 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        0.336021 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        0.368171 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        0.391266 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        0.41436 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        0.445434 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        0.526659 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        0.901306 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        0 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
      WBls:0000101 0.000154 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        0.206787 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    Ortholog (32)
    Paralog: WBGene00124176 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00132561 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00178550 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Collagen triple helix repeat and Collagen triple helix repeat (20 copies). Is an ortholog of C. elegans cof-2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA17604
    Corresponding_transcript: CJA17604.1
  Experimental_info: Microarray_results: GPL14145_CJA17604_618-677_0.934_3_C
  Remark: [190208 pad] The CGC name Cjp-cof-2.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Cjp-cof-2.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene