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WormBase Tree Display for Gene: WBGene00038898

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Name Class

WBGene00038898SMapS_parentSequencecb25.fpc4140
IdentityVersion2
NameCGC_nameCbr-unc-122From_analysisInferred_from_orthology
Sequence_nameCBG19728
Molecular_nameCBG19728
CBG19728.1
CBP32235
Other_nameCBG_19728Accession_evidenceNDBHE601474
Public_nameCbr-unc-122
DB_infoDatabaseNDBlocus_tagCBG_19728
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-unc-122
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:00000021.36472From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.24326From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.69414From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
4.67091From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.03827From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2.52943From_analysisRNASeq.briggsae.WBls:0000002.control_median
2.69201From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.065612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.377715From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.689817From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.419015From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.501616From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000042.3661From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
3.43847From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
4.51084From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
2.25855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
3.09243From_analysisRNASeq.briggsae.WBls:0000004.control_mean
3.11532From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
3.21134From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.268505From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.53258From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.10833From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.52391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.02824From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.60176From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.08203From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000355.17998From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.865133From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.80135From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2.94208From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.29522From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.78909From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
4.31274From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.753781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.839633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.997181From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.15473From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.36171From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.69868From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.77077From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.90402From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.38682From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.59046From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.87368From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.12762From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.4007From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.5428From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.71671From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
1.74269From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.54696From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.62976From_analysisRNASeq.briggsae.WBls:0000063.control_median
2.27826From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001011.71671From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.67568From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.2684From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.73835From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (28)
ParalogWBGene00032956Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033502Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Collagen triple helix repeat; Olfactomedin-like domain; and Collagen triple helix repeat (20 copies). Is an ortholog of C. elegans unc-122. In C. elegans, unc-122 is involved in negative regulation of cholinergic synaptic transmission.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19728
Corresponding_CDS_historyCBG19728:bp194
Corresponding_transcriptCBG19728.1
Other_sequence (15)
Experimental_infoExpr_patternExpr1060018
Microarray_resultsGPL8303_CB6_WBGene00038898_A
GPL8303_CB6_WBGene00038898_B
GPL8303_CB6_WBGene00038898_C
GPL8303_CB6_WBGene00038898_D
GPL8303_CB6_WBGene00038898_E
GPL14143_CBG19728_541-600_0.536_234_C
GPL14143_CBG19728_1008-1067_0.906_25_B
GPL14143_CBG19728_1211-1270_0.909_22_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene