WormBase Tree Display for Gene: WBGene00022505
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WBGene00022505 | SMap | S_parent | Sequence | ZC21 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | idpp-15 | Person_evidence | WBPerson1820 | |||||
Sequence_name | ZC21.3 | ||||||||
Molecular_name (15) | |||||||||
Other_name | CELE_ZC21.3 | Accession_evidence | NDB | BX284603 | |||||
Public_name | idpp-15 | ||||||||
DB_info | Database | AceView | gene | 3J617 | |||||
WormQTL | gene | WBGene00022505 | |||||||
WormFlux | gene | WBGene00022505 | |||||||
NDB | locus_tag | CELE_ZC21.3 | |||||||
NCBI | gene | 191053 | |||||||
RefSeq | protein | NM_001379833.1 | |||||||
NM_001306746.3 | |||||||||
NM_001306747.2 | |||||||||
NM_001306745.3 | |||||||||
NM_001379834.1 | |||||||||
SwissProt | UniProtAcc | P34587 | |||||||
TREEFAM | TREEFAM_ID | TF343101 | |||||||
TrEMBL | UniProtAcc | U4PBK5 | |||||||
G4RUC0 | |||||||||
U4PBY4 | |||||||||
U4PME0 | |||||||||
UniProt_GCRP | UniProtAcc | P34587 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 04 Sep 2013 14:28:38 | WBPerson1983 | Event | Acquires_merge | WBGene00044351 | ||||
3 | 04 Jan 2022 10:41:14 | WBPerson1983 | Name_change | CGC_name | idpp-15 | ||||
Acquires_merge | WBGene00044351 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | idpp | ||||||||
Allele | WBVar01500260 | ||||||||
WBVar01939327 | |||||||||
WBVar01266301 | |||||||||
WBVar01266302 | |||||||||
WBVar01266303 | |||||||||
WBVar01629044 | |||||||||
WBVar01499774 | |||||||||
WBVar01474370 | |||||||||
WBVar01408987 | |||||||||
WBVar01823297 | |||||||||
WBVar00845241 | |||||||||
WBVar00845242 | |||||||||
WBVar00845243 | |||||||||
WBVar00845244 | |||||||||
WBVar00845245 | |||||||||
WBVar00845246 | |||||||||
WBVar00845247 | |||||||||
WBVar00845248 | |||||||||
WBVar00845249 | |||||||||
WBVar00845250 | |||||||||
WBVar00403571 | |||||||||
WBVar00403572 | |||||||||
WBVar00403573 | |||||||||
WBVar00256279 | |||||||||
WBVar00264755 | |||||||||
WBVar02145153 | |||||||||
WBVar00068463 | |||||||||
WBVar00065629 | |||||||||
WBVar01331586 | |||||||||
WBVar01645695 | |||||||||
WBVar00065634 | |||||||||
WBVar00065639 | |||||||||
WBVar00065644 | |||||||||
WBVar02132395 | |||||||||
WBVar00065649 | |||||||||
WBVar02125261 | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (18) | |||||||||
Structured_description | Concise_description | ZC21.3 encodes a protein predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
WBPaper00012788 | |||||||||
WBPaper00012830 | |||||||||
WBPaper00012882 | |||||||||
WBPaper00012897 | |||||||||
WBPaper00013003 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including ABplppppaa; ABprppppaa; AUA; accessory cell; and head mesodermal cell based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on RNA-seq; tiling array; and microarray studies. Is affected by nineteen chemicals including Ethanol; 1-methylnicotinamide; and nicotinic acid based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZC21.3a | |||||||
ZC21.3b | |||||||||
ZC21.3c | |||||||||
ZC21.3d | |||||||||
ZC21.3e | |||||||||
Corresponding_CDS_history | ZC21.3:wp101 | ||||||||
ZC21.3:wp186 | |||||||||
ZC21.3a:wp275 | |||||||||
ZC21.3b:wp275 | |||||||||
Corresponding_transcript | ZC21.3a.1 | ||||||||
ZC21.3b.1 | |||||||||
ZC21.3c.1 | |||||||||
ZC21.3d.1 | |||||||||
ZC21.3e.1 | |||||||||
Other_sequence (11) | |||||||||
Associated_feature | WBsf645420 | ||||||||
WBsf993388 | |||||||||
WBsf1015448 | |||||||||
Experimental_info | RNAi_result | WBRNAi00058795 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00021619 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00005225 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00037987 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr67 | ||||||||
Expr1026616 | |||||||||
Expr1028105 | |||||||||
Expr1039948 | |||||||||
Expr1040236 | |||||||||
Expr1162218 | |||||||||
Expr1162221 | |||||||||
Expr2008576 | |||||||||
Expr2026815 | |||||||||
Drives_construct | WBCnstr00023615 | ||||||||
WBCnstr00024195 | |||||||||
Construct_product | WBCnstr00023615 | ||||||||
WBCnstr00024195 | |||||||||
Microarray_results | SMD_ZC21.3 | ||||||||
189769_at | |||||||||
A_12_P105691 | |||||||||
A_12_P145425 | |||||||||
A_12_P145426 | |||||||||
A_12_P145427 | |||||||||
A_12_P145428 | |||||||||
A_12_P177659 | |||||||||
Aff_ZC21.3 | |||||||||
GPL13394_WBGene00044351 | |||||||||
GPL13914_ZC21.9 | |||||||||
GPL14144_ZC21.3b_1104-1163_0.942_5_B | |||||||||
GPL14144_ZC21.3b_1224-1283_0.975_1_A | |||||||||
GPL14144_ZC21.3b_770-829_0.929_6_C | |||||||||
GPL14144_ZC21.9_190-249_0.947_2_A | |||||||||
GPL14144_ZC21.9_265-324_0.907_13_B | |||||||||
GPL14144_ZC21.9_57-116_0.921_8_C | |||||||||
GPL19516_CGZ0013372 | |||||||||
GPL19516_CGZ0055651 | |||||||||
GPL19516_CGZ0055652 | |||||||||
GPL19516_CGZ0055653 | |||||||||
GPL19516_CGZ0055654 | |||||||||
GPL19516_CGZ0055655 | |||||||||
GPL21109_Cat_ZC21.3a | |||||||||
GPL21109_ZC21.3a | |||||||||
GPL21109_ZC21.3c | |||||||||
GPL3518_CE25660 | |||||||||
GPL8304_CE_WBGene00022505_A | |||||||||
GPL8304_CE_WBGene00022505_B | |||||||||
GPL8304_CE_WBGene00044351_A | |||||||||
GPL8304_CE_WBGene00044351_B | |||||||||
GPL8673_ZC21_3P00390 | |||||||||
GPL8673_ZC21_3P00567 | |||||||||
GPL8673_ZC21_3P00864 | |||||||||
GPL8673_ZC21_9P00249 | |||||||||
GPL8673_ZC21_9P00560 | |||||||||
GPL9450_ZC21.3 | |||||||||
cea2.p.81273 | |||||||||
Expression_cluster (215) | |||||||||
Map_info | Map | III | Position | -0.2542 | |||||
Positive | Positive_clone | ZC21 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00064648 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |