WormBase Tree Display for Variation: WBVar00065639
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| WBVar00065639 | Name | Public_name | WBVar00065639 | ||
|---|---|---|---|---|---|
| Other_name | pas24725 | ||||
| cewivar00108178 | |||||
| ZC21.3e.1:c.300C>T | |||||
| ZC21.3d.1:c.98-846C>T | |||||
| ZC21.3b.1:c.300C>T | |||||
| CE48584:p.Thr100= | |||||
| CE54077:p.Thr100= | |||||
| HGVSg | CHROMOSOME_III:g.8526996C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | ZC21 | |
| Flanking_sequences | atatatttttaaaaaaatctcaataaaaaaaagaaacagctattccgagttttccctttccccgtgtcttgatcccttgaatgttttgaatttcttaggtacctcatctggatcatcatcatacaatacgaacggagttcaacgtgactcaactgatggctcatcgaacaatcaaccaggctatcttcccgattatcaaggcgatcgatacactgatcctcaacgaattgctgaaactcaagctctgaacaaagccttcttcgactcaattggaggagctccatccccaccaccattgac | ccagctcaacaaggaatgaatggatcttcttcttctaccggtcagtacaatcaacagcaatacaactcccaacaacagcaaccacaacaacaatacaatacccaacagtacaatccccagcaacaacaatataatccccaacaacagcaacaatacggcaccacttctttctcatcaaatggtcaagctatgtatcaaaccggcacaaccaattacccaacactctatcaaccatcttcttcctccccacaatacagtaacggttgtaccacttgtcgattcagacgccattttggtttc | |||
| Mapping_target | ZC21 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022505 | |||
| Transcript | ZC21.3b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | ZC21.3b.1:c.300C>T | ||||
| HGVSp | CE54077:p.Thr100= | ||||
| cDNA_position | 351 | ||||
| CDS_position | 300 | ||||
| Protein_position | 100 | ||||
| Exon_number | 4/5 | ||||
| Codon_change | acC/acT | ||||
| Amino_acid_change | T | ||||
| ZC21.3d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZC21.3d.1:c.98-846C>T | ||||
| Intron_number | 3/4 | ||||
| ZC21.3e.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | ZC21.3e.1:c.300C>T | ||||
| HGVSp | CE48584:p.Thr100= | ||||
| cDNA_position | 351 | ||||
| CDS_position | 300 | ||||
| Protein_position | 100 | ||||
| Exon_number | 4/6 | ||||
| Codon_change | acC/acT | ||||
| Amino_acid_change | T | ||||
| Method | WGS_Pasadena_Quinlan |
