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WormBase Tree Display for Gene: WBGene00022196

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Name Class

WBGene00022196SMapS_parentSequenceY71H2B
IdentityVersion2
NameCGC_namegpa-17Person_evidenceWBPerson567
Sequence_nameY71H2B.7
Molecular_nameY71H2B.7
Y71H2B.7.1
CE24633
Other_nameCELE_Y71H2B.7Accession_evidenceNDBBX284603
Public_namegpa-17
DB_infoDatabaseAceViewgene3D677
WormQTLgeneWBGene00022196
WormFluxgeneWBGene00022196
NDBlocus_tagCELE_Y71H2B.7
PanthergeneCAEEL|WormBase=WBGene00022196|UniProtKB=Q9N4F4
familyPTHR10218
NCBIgene175377
RefSeqproteinNM_001381782.2
TrEMBLUniProtAccQ9N4F4
UniProt_GCRPUniProtAccQ9N4F4
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
220 Dec 2006 12:23:23WBPerson567Name_changeCGC_namegpa-17
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgpa
Allele (63)
StrainWBStrain00032491
RNASeq_FPKM (74)
GO_annotation (14)
Ortholog (25)
Paralog (21)
Structured_descriptionConcise_descriptiongpa-17 encodes a divergent Gq alpha subunit paralogous to EGL-30; gpa-17 is reported to be expressed in intestine, but has no known function in vivo.Paper_evidenceWBPaper00027698
Person_evidenceWBPerson1685
Curator_confirmedWBPerson567
Date_last_updated11 Dec 2006 00:00:00
Automated_descriptionPredicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in adenylate cyclase-activating dopamine receptor signaling pathway and sensory perception of chemical stimulus. Predicted to be part of heterotrimeric G-protein complex.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY71H2B.7
Corresponding_transcriptY71H2B.7.1
Other_sequenceTcir_isotig20931
Associated_featureWBsf644987
WBsf658699
WBsf224531
Experimental_infoRNAi_resultWBRNAi00058274Inferred_automaticallyRNAi_primary
WBRNAi00033248Inferred_automaticallyRNAi_primary
WBRNAi00021374Inferred_automaticallyRNAi_primary
WBRNAi00058272Inferred_automaticallyRNAi_primary
WBRNAi00064974Inferred_automaticallyRNAi_primary
WBRNAi00000788Inferred_automaticallyRNAi_primary
Expr_patternExpr1020741
Expr1039787
Expr1161684
Expr2012188
Expr2030424
Microarray_results (20)
Expression_clusterWBPaper00027022:tax-6(jh107)_upregulated
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(gk119)_upregulated
WBPaper00045521:Gender_Neutral
WBPaper00046121:endoderm_unique
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048988:neuron_expressed
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050843:sesamin_downregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:intestine_enriched
WBPaper00051245:cytoplasm_specific
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053771:up_at_24h-NaCl
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056167:Cry5B_downregulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay1
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_OP50
WBPaper00058948:PA14_downregulated
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059754:P.aeruginosa_PA14_upregulated
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:HB115_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061274:microgravity_downregulated
WBPaper00061340:Parent_of_PVP_and_rect_V
WBPaper00061340:Pharyngeal_intestinal_valve
WBPaper00061340:Rectal_gland
WBPaper00061341:28C_48h_upregulated
WBPaper00061466:nath-10(icb102)_upregulated
WBPaper00061527:snt-4_17845-T27C4.1
WBPaper00061651:Rectal_gland_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062184:PA14_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_downregulated_N2
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064716:paraquat_downregulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00065029:cadmium_upregulated
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00065841:3_4
WBPaper00065841:11_0
WBPaper00065841:12_0
WBPaper00065841:13_1
WBPaper00065841:30_0
WBPaper00065841:30_3
WBPaper00065841:30_4
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_downregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00025141:N2_Expressed_Genes
WBPaper00028789:PA14_vs_OP50_upregulated_4hr
WBPaper00029437:rde-4_upregulated
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00034757:up_by_oxidative_stress
WBPaper00035588:alg-1(-)_upregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00036123:Atrazine_regulated
WBPaper00036286:Pattern_G
WBPaper00037695:WC_5-day
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038231:Cry5B_2-fold_upregulated
WBPaper00038304:octr-1_regulated
WBPaper00039851:HK_C_albicans_vs_HK_OP50
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00041174:genotypic
WBPaper00041174:genotypic_prime
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00045015:acs-3(ft5)_upregulated
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00048637:lin-35(n745)_starvation_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00053688:E.faecalis_upregulated
WBPaper00053688:E.faecium_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
[cgc6390]:Cluster_A
Map_infoMapIIIPosition-11.92Error0.116358
PositivePositive_cloneY71H2BInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031936
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene