WormBase Tree Display for Gene: WBGene00022129

WBGene00022129 SMap: S_parent: Sequence: Y71F9B
  Identity: Version: 2
    Name: CGC_name: lron-11 Person_evidence: WBPerson637
      Sequence_name: Y71F9B.8
      Molecular_name: Y71F9B.8a
        Y71F9B.8a.1
        CE25571
        Y71F9B.8e
        CE50058
        Y71F9B.8b
        Y71F9B.8c
        Y71F9B.8e.1
      Other_name: 1D304 Accession_evidence: EMBL AF304125
        CELE_Y71F9B.8 Accession_evidence: NDB BX284601
      Public_name: lron-11
    DB_info: Database: AceView gene 1D304
        WormQTL gene WBGene00022129
        WormFlux gene WBGene00022129
        NDB locus_tag CELE_Y71F9B.8
        Panther gene CAEEL|WormBase=WBGene00022129|UniProtKB=G5EGE7
          family PTHR45617
        NCBI gene 171837
        RefSeq protein NR_131374.1
            NR_131373.1
            NM_058634.6
            NM_001306443.3
        TrEMBL UniProtAcc G5EGE7
            A0A078BS18
        UniProt_GCRP UniProtAcc G5EGE7
        RNAcentral URSid URS00007A37A6
            URS00007B9726
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 09 Dec 2011 15:47:23 WBPerson2970 Name_change: CGC_name: lron-11
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lron
    Allele (159)
    Strain: WBStrain00032490
      WBStrain00047597
    RNASeq_FPKM (74)
    GO_annotation: 00000513
    Ortholog (32)
    Paralog (13)
    Structured_description: Automated_description: Predicted to be located in membrane. Expressed in hypodermis; muscle cell; and pharynx. Is an ortholog of human CPN2 (carboxypeptidase N subunit 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y71F9B.8a
      Y71F9B.8e
    Corresponding_transcript: Y71F9B.8b
      Y71F9B.8c
      Y71F9B.8a.1
      Y71F9B.8e.1
    Other_sequence: Dviv_isotig17421
      FK802189.1
      JI223429.1
      Hbac_isotig05955
    Associated_feature (20)
  Experimental_info: RNAi_result: WBRNAi00058185 Inferred_automatically: RNAi_primary
      WBRNAi00033460 Inferred_automatically: RNAi_primary
      WBRNAi00004814 Inferred_automatically: RNAi_primary
      WBRNAi00004813 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9912
      Expr1014949
      Expr1039742
      Expr1161604
      Expr2013269
      Expr2031500
    Drives_construct: WBCnstr00014398
    Microarray_results (20)
    Expression_cluster: WBPaper00032031:DConiospora_downregulated_cDNA_24h
      WBPaper00037946:LIN-39_interacting
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045861:wdr-5(ok1417)_upregulated
      WBPaper00046121:ecdoderm_unique
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00050094:mes-2(bn11)_upregulated
      WBPaper00050094:mes-6(bn66)_upregulated
      WBPaper00050412:cco-1(RNAi)_upregulated_N2
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053814:15C_downregulated_OP50
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056443:DietaryRestriction_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056619:CEPsh_enriched
      WBPaper00056855:his-72(uge40)_upregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058711:wdr-5(ok1417)_upregulated
      WBPaper00058958:100mGy-irradiation-72h_upregulated
      WBPaper00058969:RIS_enriched
      WBPaper00059224:tph-1(mg280)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059987:Wounding_downregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:ADA_ADE_grandparent
      WBPaper00061340:AIM
      WBPaper00061340:AIN_parent
      WBPaper00061340:AMso_parent
      WBPaper00061340:ASE_parent
      WBPaper00061340:ASI_parent
      WBPaper00061340:ASK_parent
      WBPaper00061340:AVE
      WBPaper00061340:AVH_parent
      WBPaper00061340:Ciliated_amphid_neuron
      WBPaper00061340:Ciliated_non_amphid_neuron
      WBPaper00061340:DA
      WBPaper00061340:DB
      WBPaper00061340:Glia
      WBPaper00061340:Neuroblast_ADF_AWB
      WBPaper00061340:Neuroblast_AFD_RMD
      WBPaper00061340:Neuroblast_AIZ_FLP_RMG
      WBPaper00061340:Neuroblast_ASE_ASJ_AUA
      WBPaper00061340:Neuroblast_ASG_AWA
      WBPaper00061340:Neuroblast_ASH_RIB
      WBPaper00061340:Neuroblast_AWC_SAAVx
      WBPaper00061340:Neuroblast_BAG_SMDVx
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
      WBPaper00061340:Parents_of_Y_DA6_DA7_DA9
      WBPaper00061340:Parent_of_AMsh_URB
      WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
      WBPaper00061340:PLM
      WBPaper00061340:PVQ_parent
      WBPaper00061340:PVR
      WBPaper00061340:RIA_parent
      WBPaper00061340:RIM
      WBPaper00061340:RME
      WBPaper00061340:Y
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061466:nath-10(icb99)_downregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061527:F58E6.13_17427-ifa-3
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062590:Aging_downregulated_hypodermis
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064502:nhr-23(kry61);spe-44(fx110)_upregulated
      WBPaper00064871:hypoxia_downregulated_F3
      WBPaper00065835:Day11_vs_Day1_upregulated
      WBPaper00065835:mtH2S-AP39-D0-treatment_downregulated_Day11
      WBPaper00065841:17_0
      WBPaper00065841:32_0
      WBPaper00065841:55_0
      WBPaper00065841:66_0
      WBPaper00065841:68_0
      WBPaper00065841:111_0
      WBPaper00065841:120_0
      WBPaper00065841:121_0
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065984:pals-17(syb3980)_downregulated
      cgc4386_cluster_6_4
      cgc4489_group_20
      WBPaper00025032:cluster_137
      WBPaper00026980:intestine_enriched
      WBPaper00027111:rrf-2(ok210)_upregulated
      WBPaper00029437:dcr-1_upregulated
      WBPaper00030985:Photorhabdus_luminescens_upregulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_1
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00035560:ahr-1_downregulated
      WBPaper00040963:Q50_down
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00040985:AIN-2_asynchronous_intestine
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00040985:AIN-2_L4_intestine
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00042548:miRISC_enriched
      [cgc5767]:cluster_34
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(101_min)
      [cgc5767]:expression_class_E_pi(101_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SET
      [cgc5767]:expression_class_SE_pi(101_min)
  Map_info: Map: I Position: -7.2757
    Positive: Positive_clone: Y71F9B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00063726
    WBPaper00064725
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene