WormBase Tree Display for Gene: WBGene00021843

WBGene00021843 SMap: S_parent: Sequence: Y54E10BR
  Identity: Version: 2
    Name: CGC_name: nobh-1 Person_evidence: WBPerson5956
      Sequence_name: Y54E10BR.4
      Molecular_name: Y54E10BR.4a
        Y54E10BR.4a.1
        CE27481
        Y54E10BR.4b
        CE54586
        Y54E10BR.4b.1
      Other_name: Y54E10BR.e Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y54E10BR.f Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y54E10BR.g Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y54E10BR.4 Accession_evidence: NDB BX284601
      Public_name: nobh-1
    DB_info: Database: AceView gene 1D589
        WormQTL gene WBGene00021843
        WormFlux gene WBGene00021843
        NDB locus_tag CELE_Y54E10BR.4
        Panther gene CAEEL|WormBase=WBGene00021843|UniProtKB=Q9N3D3
          family PTHR12814
        NCBI gene 171874
        RefSeq protein NM_001424977.1
            NM_058689.6
        TrEMBL UniProtAcc Q9N3D3
        UniProt_GCRP UniProtAcc Q9N3D3
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Jan 2024 23:28:21 WBPerson51134 Name_change: CGC_name: nobh-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nobh
    Allele (144)
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP1080
    Ortholog (35)
    Structured_description: Automated_description: Predicted to enable RNA endonuclease activity. Predicted to be involved in maturation of SSU-rRNA. Located in cytoplasm. Expressed in neurons. Is an ortholog of human NOB1 (NIN1 (RPN12) binding protein 1 homolog). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y54E10BR.4a
      Y54E10BR.4b
    Corresponding_CDS_history: Y54E10BR.4a:wp50
      Y54E10BR.4b:wp50
    Corresponding_transcript: Y54E10BR.4a.1
      Y54E10BR.4b.1
    Other_sequence (28)
    Associated_feature: WBsf643127
      WBsf980981
      WBsf983045
      WBsf983046
      WBsf1009443
      WBsf217360
  Experimental_info: RNAi_result (24)
    Expr_pattern: Expr4584
      Expr9578
      Expr1016632
      Expr1039587
      Expr1160799
      Expr2007894
      Expr2026136
    Drives_construct: WBCnstr00012093
    Construct_product: WBCnstr00014143
    Microarray_results (24)
    Expression_cluster: WBPaper00028451:Low_abundance_spermatogenesis_enriched
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:coelomocytes_larva_enriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00040990:PA14_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045521:Gender_Neutral
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:B0511.6_180-Y54E10BR.4_1509
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
      WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_16
      WBPaper00025032:cluster_30
      WBPaper00025032:cluster_138
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00032948:StarveUp3
      WBPaper00035227:heat_shock_regulated
      WBPaper00036286:Pattern_B
      WBPaper00036429:glp-1(oz112)_upregulated
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00040210:Chlorpyrifos_24C_regulated
      WBPaper00040821:Au-NP_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041207:CE_dauer_up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00047070:DAF-16-dependent_UV_response
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(41_min)
      [cgc5767]:expression_class_E_pi(53_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_SM
      [cgc6390]:herm_soma-enriched
    Interaction: WBInteraction000036210
      WBInteraction000037058
      WBInteraction000042887
      WBInteraction000045256
      WBInteraction000045258
      WBInteraction000045268
      WBInteraction000045270
      WBInteraction000045288
      WBInteraction000045297
      WBInteraction000048626
      WBInteraction000048649
      WBInteraction000109499
      WBInteraction000111392
      WBInteraction000116042
      WBInteraction000116248
      WBInteraction000125109
      WBInteraction000134259
      WBInteraction000136531
      WBInteraction000136638
      WBInteraction000138130
      WBInteraction000139530
      WBInteraction000144041
      WBInteraction000144607
      WBInteraction000146781
      WBInteraction000147950
      WBInteraction000147992
      WBInteraction000148380
      WBInteraction000149357
      WBInteraction000151343
      WBInteraction000151748
      WBInteraction000152012
      WBInteraction000152180
      WBInteraction000156513
      WBInteraction000159689
      WBInteraction000159978
      WBInteraction000161479
      WBInteraction000163485
      WBInteraction000166535
      WBInteraction000168240
      WBInteraction000170147
      WBInteraction000170270
      WBInteraction000170953
      WBInteraction000171184
      WBInteraction000172381
      WBInteraction000175452
      WBInteraction000177064
      WBInteraction000179133
      WBInteraction000183390
      WBInteraction000185048
      WBInteraction000185151
      WBInteraction000185183
      WBInteraction000186693
      WBInteraction000187391
      WBInteraction000187404
      WBInteraction000188945
      WBInteraction000190567
      WBInteraction000191024
      WBInteraction000191056
      WBInteraction000191057
      WBInteraction000193202
      WBInteraction000195382
      WBInteraction000196544
      WBInteraction000196683
      WBInteraction000197453
      WBInteraction000198872
      WBInteraction000200029
      WBInteraction000201155
      WBInteraction000201181
      WBInteraction000212851
      WBInteraction000213319
      WBInteraction000214338
      WBInteraction000219434
      WBInteraction000224037
      WBInteraction000224495
      WBInteraction000229254
      WBInteraction000235473
      WBInteraction000240607
      WBInteraction000250301
      WBInteraction000250741
      WBInteraction000254371
      WBInteraction000255494
      WBInteraction000255649
      WBInteraction000257841
      WBInteraction000258662
      WBInteraction000259560
      WBInteraction000261671
      WBInteraction000263480
      WBInteraction000266140
      WBInteraction000266196
      WBInteraction000274340
      WBInteraction000280887
      WBInteraction000282107
      WBInteraction000285431
      WBInteraction000287451
      WBInteraction000288143
      WBInteraction000289627
      WBInteraction000297462
      WBInteraction000301205
      WBInteraction000302882
      WBInteraction000304540
      WBInteraction000304565
      WBInteraction000306282
      WBInteraction000306300
      WBInteraction000308373
      WBInteraction000310908
      WBInteraction000311183
      WBInteraction000314903
      WBInteraction000318783
      WBInteraction000334534
      WBInteraction000334809
      WBInteraction000335414
      WBInteraction000346376
      WBInteraction000353275
      WBInteraction000354944
      WBInteraction000356475
      WBInteraction000356982
      WBInteraction000358359
      WBInteraction000361183
      WBInteraction000367131
      WBInteraction000368256
      WBInteraction000374783
      WBInteraction000376925
      WBInteraction000381023
      WBInteraction000386310
      WBInteraction000389465
      WBInteraction000389839
      WBInteraction000390320
      WBInteraction000408073
      WBInteraction000418524
      WBInteraction000418801
      WBInteraction000421000
      WBInteraction000424124
      WBInteraction000428408
      WBInteraction000432279
      WBInteraction000453570
      WBInteraction000454837
      WBInteraction000455396
      WBInteraction000458220
      WBInteraction000463299
      WBInteraction000463677
      WBInteraction000463993
      WBInteraction000465311
      WBInteraction000466409
      WBInteraction000466679
      WBInteraction000466917
      WBInteraction000467742
      WBInteraction000468082
      WBInteraction000468100
      WBInteraction000468631
      WBInteraction000469384
      WBInteraction000469967
      WBInteraction000470196
      WBInteraction000470720
      WBInteraction000471363
      WBInteraction000471548
      WBInteraction000472238
      WBInteraction000472411
      WBInteraction000472412
      WBInteraction000472761
      WBInteraction000472768
      WBInteraction000473821
      WBInteraction000473928
      WBInteraction000474238
      WBInteraction000474471
      WBInteraction000475286
      WBInteraction000505121
      WBInteraction000575299
      WBInteraction000582125
  Map_info: Map: I Position: -4.94196
    Positive: Positive_clone: Y54E10BR Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027740
    WBPaper00029254
    WBPaper00034662
    WBPaper00038444
    WBPaper00038491
    WBPaper00055090
    WBPaper00064339
    WBPaper00064934
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene