WormBase Tree Display for Gene: WBGene00021843

WBGene00021843 SMap: S_parent: Sequence: Y54E10BR
  Identity: Version: 2
    Name: CGC_name: nobh-1 Person_evidence: WBPerson5956
      Sequence_name: Y54E10BR.4
      Molecular_name: Y54E10BR.4a
        Y54E10BR.4a.1
        CE27481
        Y54E10BR.4b
        CE54586
        Y54E10BR.4b.1
      Other_name: Y54E10BR.e Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y54E10BR.f Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y54E10BR.g Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y54E10BR.4 Accession_evidence: NDB BX284601
      Public_name: nobh-1
    DB_info: Database: AceView gene 1D589
        WormQTL gene WBGene00021843
        WormFlux gene WBGene00021843
        NDB locus_tag CELE_Y54E10BR.4
        Panther gene CAEEL|WormBase=WBGene00021843|UniProtKB=Q9N3D3
          family PTHR12814
        NCBI gene 171874
        RefSeq protein NM_001424977.1
            NM_058689.6
        TrEMBL UniProtAcc Q9N3D3
        UniProt_GCRP UniProtAcc Q9N3D3
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Jan 2024 23:28:21 WBPerson51134 Name_change: CGC_name: nobh-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nobh
    Allele: WBVar01493259
      WBVar02039310
      WBVar02039311
      WBVar01391731
      WBVar01391732
      WBVar02028360
      WBVar00623755
      WBVar01391733
      WBVar00623756
      WBVar01820629
      WBVar01391735
      WBVar00623757
      WBVar00623758
      WBVar01421104
      WBVar01421107
      WBVar00623759
      WBVar01421109
      WBVar00623760
      WBVar00623761
      WBVar01421110
      WBVar00623762
      WBVar02106073
      WBVar00623764
      WBVar00623765
      WBVar00623766
      WBVar00623767
      WBVar00623768
      WBVar00623769
      WBVar00623770
      WBVar00623771
      WBVar00623772
      WBVar00623773
      WBVar01263583
      WBVar00623774
      WBVar00623775
      WBVar00623776
      WBVar00623777
      WBVar00623778
      WBVar00623779
      WBVar00623780
      WBVar00623781
      WBVar00623782
      WBVar00623783
      WBVar00623784
      WBVar00623785
      WBVar00623786
      WBVar00603976
      WBVar01602782
      WBVar01602783
      WBVar01263361
      WBVar01411330
      WBVar01762153
      WBVar01762154
      WBVar01762155
      WBVar00151567
      WBVar01762156
      WBVar00151568
      WBVar01762157
      WBVar01762158
      WBVar01263139
      WBVar00151569
      WBVar00151570
      WBVar01762159
      WBVar00151571
      WBVar00151572
      WBVar00151573
      WBVar00151574
      WBVar00151575
      WBVar01430872
      WBVar01430873
      WBVar01982032
      WBVar01982033
      WBVar01531720
      WBVar01531721
      WBVar01982034
      WBVar01982035
      WBVar02045436
      WBVar02045437
      WBVar02045438
      WBVar02045439
      WBVar01694721
      WBVar01499786
      WBVar01263694
      WBVar01573896
      WBVar01573897
      WBVar02126764
      WBVar02126765
      WBVar02126766
      WBVar02126767
      WBVar02126768
      WBVar01499985
      WBVar02126769
      WBVar01280196
      WBVar01280197
      WBVar01280198
      WBVar00535642
      WBVar00535645
      WBVar01498892
      WBVar01414200
      WBVar00247600
      WBVar01817409
      WBVar01817410
      WBVar01473766
      WBVar01817411
      WBVar01817412
      WBVar01817413
      WBVar01817414
      WBVar01475165
      WBVar01475166
      WBVar00309599
      WBVar01414222
      WBVar01956565
      WBVar01263472
      WBVar01263250
      WBVar01956566
      WBVar01956568
      WBVar01956569
      WBVar01414233
      WBVar01788489
      WBVar01414244
      WBVar01341570
      WBVar01341571
      WBVar01835956
      WBVar01341573
      WBVar01341577
      WBVar01341579
      WBVar02080086
      WBVar02111191
      WBVar02111192
      WBVar00028336
      WBVar00329654
      WBVar00329655
      WBVar00329656
      WBVar00329657
      WBVar00329658
      WBVar00329659
      WBVar00329660
      WBVar00329661
      WBVar00329662
      WBVar00329663
      WBVar02151419
      WBVar00329664
      WBVar01545904
      WBVar01545905
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP1080
    Ortholog (35)
    Structured_description: Automated_description: Predicted to enable RNA endonuclease activity. Predicted to be involved in maturation of SSU-rRNA. Located in cytoplasm. Expressed in neurons. Is an ortholog of human NOB1 (NIN1 (RPN12) binding protein 1 homolog). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y54E10BR.4a
      Y54E10BR.4b
    Corresponding_CDS_history: Y54E10BR.4a:wp50
      Y54E10BR.4b:wp50
    Corresponding_transcript: Y54E10BR.4a.1
      Y54E10BR.4b.1
    Other_sequence (28)
    Associated_feature: WBsf643127
      WBsf980981
      WBsf983045
      WBsf983046
      WBsf1009443
      WBsf217360
  Experimental_info: RNAi_result (24)
    Expr_pattern: Expr4584
      Expr9578
      Expr1016632
      Expr1039587
      Expr1160799
      Expr2007894
      Expr2026136
    Drives_construct: WBCnstr00012093
    Construct_product: WBCnstr00014143
    Microarray_results (24)
    Expression_cluster (129)
    Interaction: WBInteraction000036210
      WBInteraction000037058
      WBInteraction000042887
      WBInteraction000045256
      WBInteraction000045258
      WBInteraction000045268
      WBInteraction000045270
      WBInteraction000045288
      WBInteraction000045297
      WBInteraction000048626
      WBInteraction000048649
      WBInteraction000109499
      WBInteraction000111392
      WBInteraction000116042
      WBInteraction000116248
      WBInteraction000125109
      WBInteraction000134259
      WBInteraction000136531
      WBInteraction000136638
      WBInteraction000138130
      WBInteraction000139530
      WBInteraction000144041
      WBInteraction000144607
      WBInteraction000146781
      WBInteraction000147950
      WBInteraction000147992
      WBInteraction000148380
      WBInteraction000149357
      WBInteraction000151343
      WBInteraction000151748
      WBInteraction000152012
      WBInteraction000152180
      WBInteraction000156513
      WBInteraction000159689
      WBInteraction000159978
      WBInteraction000161479
      WBInteraction000163485
      WBInteraction000166535
      WBInteraction000168240
      WBInteraction000170147
      WBInteraction000170270
      WBInteraction000170953
      WBInteraction000171184
      WBInteraction000172381
      WBInteraction000175452
      WBInteraction000177064
      WBInteraction000179133
      WBInteraction000183390
      WBInteraction000185048
      WBInteraction000185151
      WBInteraction000185183
      WBInteraction000186693
      WBInteraction000187391
      WBInteraction000187404
      WBInteraction000188945
      WBInteraction000190567
      WBInteraction000191024
      WBInteraction000191056
      WBInteraction000191057
      WBInteraction000193202
      WBInteraction000195382
      WBInteraction000196544
      WBInteraction000196683
      WBInteraction000197453
      WBInteraction000198872
      WBInteraction000200029
      WBInteraction000201155
      WBInteraction000201181
      WBInteraction000212851
      WBInteraction000213319
      WBInteraction000214338
      WBInteraction000219434
      WBInteraction000224037
      WBInteraction000224495
      WBInteraction000229254
      WBInteraction000235473
      WBInteraction000240607
      WBInteraction000250301
      WBInteraction000250741
      WBInteraction000254371
      WBInteraction000255494
      WBInteraction000255649
      WBInteraction000257841
      WBInteraction000258662
      WBInteraction000259560
      WBInteraction000261671
      WBInteraction000263480
      WBInteraction000266140
      WBInteraction000266196
      WBInteraction000274340
      WBInteraction000280887
      WBInteraction000282107
      WBInteraction000285431
      WBInteraction000287451
      WBInteraction000288143
      WBInteraction000289627
      WBInteraction000297462
      WBInteraction000301205
      WBInteraction000302882
      WBInteraction000304540
      WBInteraction000304565
      WBInteraction000306282
      WBInteraction000306300
      WBInteraction000308373
      WBInteraction000310908
      WBInteraction000311183
      WBInteraction000314903
      WBInteraction000318783
      WBInteraction000334534
      WBInteraction000334809
      WBInteraction000335414
      WBInteraction000346376
      WBInteraction000353275
      WBInteraction000354944
      WBInteraction000356475
      WBInteraction000356982
      WBInteraction000358359
      WBInteraction000361183
      WBInteraction000367131
      WBInteraction000368256
      WBInteraction000374783
      WBInteraction000376925
      WBInteraction000381023
      WBInteraction000386310
      WBInteraction000389465
      WBInteraction000389839
      WBInteraction000390320
      WBInteraction000408073
      WBInteraction000418524
      WBInteraction000418801
      WBInteraction000421000
      WBInteraction000424124
      WBInteraction000428408
      WBInteraction000432279
      WBInteraction000453570
      WBInteraction000454837
      WBInteraction000455396
      WBInteraction000458220
      WBInteraction000463299
      WBInteraction000463677
      WBInteraction000463993
      WBInteraction000465311
      WBInteraction000466409
      WBInteraction000466679
      WBInteraction000466917
      WBInteraction000467742
      WBInteraction000468082
      WBInteraction000468100
      WBInteraction000468631
      WBInteraction000469384
      WBInteraction000469967
      WBInteraction000470196
      WBInteraction000470720
      WBInteraction000471363
      WBInteraction000471548
      WBInteraction000472238
      WBInteraction000472411
      WBInteraction000472412
      WBInteraction000472761
      WBInteraction000472768
      WBInteraction000473821
      WBInteraction000473928
      WBInteraction000474238
      WBInteraction000474471
      WBInteraction000475286
      WBInteraction000505121
      WBInteraction000575299
      WBInteraction000582125
  Map_info: Map: I Position: -4.94196
    Positive: Positive_clone: Y54E10BR Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027740
    WBPaper00029254
    WBPaper00034662
    WBPaper00038444
    WBPaper00038491
    WBPaper00055090
    WBPaper00064339
    WBPaper00064934
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene