WormBase Tree Display for Gene: WBGene00021506
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| WBGene00021506 | SMap | S_parent | Sequence | Y41D4A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y41D4A.4 | |||||||
| Molecular_name (15) | |||||||||
| Other_name | CELE_Y41D4A.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | Y41D4A.4 | ||||||||
| DB_info | Database | AceView | gene | 4C515 | |||||
| WormQTL | gene | WBGene00021506 | |||||||
| WormFlux | gene | WBGene00021506 | |||||||
| NDB | locus_tag | CELE_Y41D4A.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021506|UniProtKB=U4PRX8 | |||||||
| family | PTHR10766 | ||||||||
| NCBI | gene | 176983 | |||||||
| RefSeq | protein | NM_067729.6 | |||||||
| NM_001380063.1 | |||||||||
| NM_001380061.2 | |||||||||
| NM_001380064.1 | |||||||||
| NM_001380062.2 | |||||||||
| TrEMBL | UniProtAcc | Q95Y24 | |||||||
| U4PBU4 | |||||||||
| U4PML6 | |||||||||
| U4PRX8 | |||||||||
| U4PC73 | |||||||||
| UniProt_GCRP | UniProtAcc | U4PRX8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (131) | |||||||||
| Strain | WBStrain00002275 | ||||||||
| WBStrain00002276 | |||||||||
| WBStrain00002398 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089554 | ||||||||
| 00089555 | |||||||||
| 00089556 | |||||||||
| 00089557 | |||||||||
| 00125841 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00006472 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00014119 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in protein localization to membrane. Predicted to be located in membrane. Expressed in head and tail. Is an ortholog of human TM9SF3 (transmembrane 9 superfamily member 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y41D4A.4a | |||||||
| Y41D4A.4b | |||||||||
| Y41D4A.4c | |||||||||
| Y41D4A.4d | |||||||||
| Y41D4A.4e | |||||||||
| Corresponding_transcript | Y41D4A.4a.1 | ||||||||
| Y41D4A.4b.1 | |||||||||
| Y41D4A.4c.1 | |||||||||
| Y41D4A.4d.1 | |||||||||
| Y41D4A.4e.1 | |||||||||
| Other_sequence (78) | |||||||||
| Associated_feature | WBsf645817 | ||||||||
| WBsf645818 | |||||||||
| WBsf659927 | |||||||||
| WBsf659928 | |||||||||
| WBsf659929 | |||||||||
| WBsf659930 | |||||||||
| WBsf995521 | |||||||||
| WBsf1016780 | |||||||||
| WBsf227975 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056371 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020487 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram487 | ||||||||
| Chronogram855 | |||||||||
| Chronogram1443 | |||||||||
| Expr6963 | |||||||||
| Expr6964 | |||||||||
| Expr1014160 | |||||||||
| Expr1039398 | |||||||||
| Expr1159858 | |||||||||
| Expr2007437 | |||||||||
| Expr2025673 | |||||||||
| Drives_construct | WBCnstr00002975 | ||||||||
| WBCnstr00002976 | |||||||||
| WBCnstr00004483 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (103) | |||||||||
| SAGE_tag | SAGE:tatccaaagt | Strand | Antisense | ||||||
| SAGE:ggaatcttcg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:accggcaccatcggata | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:agtccgagagcggcggc | Strand | Antisense | |||||||
| SAGE:accggcacca | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction | WBInteraction000290719 | ||||||||
| WBInteraction000581223 | |||||||||
| Map_info | Positive | Positive_clone | Y41D4A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | -16.0664 | |||||||
| Reference | WBPaper00026601 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| Method | Gene |
