WormBase Tree Display for Gene: WBGene00021506

WBGene00021506 SMap: S_parent: Sequence: Y41D4A
  Identity: Version: 1
    Name: Sequence_name: Y41D4A.4
      Molecular_name (15)
      Other_name: CELE_Y41D4A.4 Accession_evidence: NDB BX284604
      Public_name: Y41D4A.4
    DB_info: Database: AceView gene 4C515
        WormQTL gene WBGene00021506
        WormFlux gene WBGene00021506
        NDB locus_tag CELE_Y41D4A.4
        Panther gene CAEEL|WormBase=WBGene00021506|UniProtKB=U4PRX8
          family PTHR10766
        NCBI gene 176983
        RefSeq protein NM_067729.6
            NM_001380063.1
            NM_001380061.2
            NM_001380064.1
            NM_001380062.2
        TrEMBL UniProtAcc Q95Y24
            U4PBU4
            U4PML6
            U4PRX8
            U4PC73
        UniProt_GCRP UniProtAcc U4PRX8
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (131)
    Strain: WBStrain00002275
      WBStrain00002276
      WBStrain00002398
    RNASeq_FPKM (74)
    GO_annotation: 00089554
      00089555
      00089556
      00089557
      00125841
    Ortholog (36)
    Paralog: WBGene00006472 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00014119 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in protein localization to membrane. Predicted to be located in membrane. Expressed in head and tail. Is an ortholog of human TM9SF3 (transmembrane 9 superfamily member 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y41D4A.4a
      Y41D4A.4b
      Y41D4A.4c
      Y41D4A.4d
      Y41D4A.4e
    Corresponding_transcript: Y41D4A.4a.1
      Y41D4A.4b.1
      Y41D4A.4c.1
      Y41D4A.4d.1
      Y41D4A.4e.1
    Other_sequence (78)
    Associated_feature: WBsf645817
      WBsf645818
      WBsf659927
      WBsf659928
      WBsf659929
      WBsf659930
      WBsf995521
      WBsf1016780
      WBsf227975
  Experimental_info: RNAi_result: WBRNAi00056371 Inferred_automatically: RNAi_primary
      WBRNAi00020487 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram487
      Chronogram855
      Chronogram1443
      Expr6963
      Expr6964
      Expr1014160
      Expr1039398
      Expr1159858
      Expr2007437
      Expr2025673
    Drives_construct: WBCnstr00002975
      WBCnstr00002976
      WBCnstr00004483
    Microarray_results (29)
    Expression_cluster: WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038118:aak-2(gt33)_upregulated
      WBPaper00044616:alg-3-4_downregulated_gene
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053810:clk-1(qm30)_downregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055648:germline_expressed
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056617:adr-2(ok735)_upregulated_L4_protein
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00057288:Cold_downregulated_protein
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00059174:MEG-3_interacting
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059471:EGL-43_interacting
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00061274:hypergravity_15xg_upregulated
      WBPaper00061274:microgravity_upregulated
      WBPaper00061340:g1A
      WBPaper00061340:GLR
      WBPaper00061340:hmc_and_homolog
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061527:T23B5.3_15993-C17D12.1
      WBPaper00061651:VC_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064107:lin-35(n745)_downregulated
      WBPaper00064201:SNA-3_interacting
      WBPaper00064871:hypoxia_upregulated_F1
      WBPaper00065120:body-muscle-transcriptome
      cgc4489_group_16
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00034739:N2lessDR1350
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_G
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00041002:HF_11d_2.0mM_Up
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
      WBPaper00042128:gei-8(ok1671)_downregulated
      WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_rapamycin_upregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SE_pi(83_min)
    SAGE_tag: SAGE:tatccaaagt Strand: Antisense
      SAGE:ggaatcttcg Strand: Sense
        Unambiguously_mapped
      SAGE:accggcaccatcggata Strand: Sense
        Unambiguously_mapped
      SAGE:agtccgagagcggcggc Strand: Antisense
      SAGE:accggcacca Strand: Sense
        Unambiguously_mapped
    Interaction: WBInteraction000290719
      WBInteraction000581223
  Map_info: Positive: Positive_clone: Y41D4A Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV -16.0664
  Reference: WBPaper00026601
    WBPaper00038491
    WBPaper00055090
    WBPaper00061547
  Method: Gene