WormBase Tree Display for Gene: WBGene00021395
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WBGene00021395 | SMap | S_parent | Sequence | Y38C1AA | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | pnc-1 | Paper_evidence | WBPaper00029149 | |||||
Sequence_name | Y38C1AA.3 | ||||||||
Molecular_name | Y38C1AA.3a | ||||||||
Y38C1AA.3a.1 | |||||||||
CE27609 | |||||||||
Y38C1AA.3b | |||||||||
CE41520 | |||||||||
Y38C1AA.3b.1 | |||||||||
Y38C1AA.3b.2 | |||||||||
Other_name | cog-3 | Paper_evidence | WBPaper00035288 | ||||||
Person_evidence | WBPerson625 | ||||||||
Y38C1AA.h | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y38C1AA.3 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | pnc-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 09 Mar 2007 14:55:52 | WBPerson2970 | Name_change | CGC_name | pnc-1 | ||||
3 | 26 Feb 2010 09:52:36 | WBPerson2970 | Event | Acquires_merge | WBGene00000586 | ||||
Name_change | Other_name | cog-3 | |||||||
Acquires_merge | WBGene00000586 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pnc | ||||||||
Allele (101) | |||||||||
Legacy_information | [Hanna-Rose W] cog for connection of gonad defective, anchor cell fails to clear opening between uterus and vulva, egg laying defective, about 75 percent of hermaphrodites bag | ||||||||
Strain | WBStrain00026506 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00005194 | ||||||||
00005195 | |||||||||
00005196 | |||||||||
00005197 | |||||||||
00005198 | |||||||||
00005199 | |||||||||
00005200 | |||||||||
00094214 | |||||||||
Ortholog (31) | |||||||||
Paralog | WBGene00013336 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | pnc-1 encodes, by alternative splicing, two isoforms of a putative pyrazinamidase/nicotinamidase, orthologous to budding yeast Pnc1p, that is required for normal lifespan; PNC-1 is paralogous to Y57G11C.47; because its overexpression increases survival during oxidative stress, PNC-1 may be required for oxidative resistance in vivo; pnc-1(RNAi) animals are abnormally short-lived. | Paper_evidence | WBPaper00029149 | |||||
WBPaper00031677 | |||||||||
WBPaper00031678 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 15 Apr 2008 00:00:00 | ||||||||
Automated_description | Enables nicotinamidase activity. Involved in nicotinamide metabolic process. Located in cytoplasm; extracellular space; and nucleus. Expressed in several structures, including coelomocyte; epithelial cell; head ganglion; lumbar neurons; and pharyngeal cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y38C1AA.3a | |||||||
Y38C1AA.3b | |||||||||
Corresponding_CDS_history | Y38C1AA.3:wp180 | ||||||||
Corresponding_transcript | Y38C1AA.3a.1 | ||||||||
Y38C1AA.3b.1 | |||||||||
Y38C1AA.3b.2 | |||||||||
Other_sequence | GR979013.1 | ||||||||
SC01264 | |||||||||
JI245882.1 | |||||||||
Associated_feature | WBsf645740 | ||||||||
WBsf645741 | |||||||||
WBsf975989 | |||||||||
WBsf975990 | |||||||||
WBsf975991 | |||||||||
Experimental_info | RNAi_result | WBRNAi00055984 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00055980 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (13) | |||||||||
Drives_construct | WBCnstr00000157 | ||||||||
WBCnstr00019360 | |||||||||
Construct_product | WBCnstr00000157 | ||||||||
WBCnstr00019360 | |||||||||
WBCnstr00019364 | |||||||||
WBCnstr00019368 | |||||||||
WBCnstr00019372 | |||||||||
WBCnstr00019413 | |||||||||
WBCnstr00019415 | |||||||||
WBCnstr00019417 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (125) | |||||||||
Interaction (100) | |||||||||
Map_info | Map | IV | Position | -26.8555 | Error | 0.00358 | |||
Positive | Positive_clone | Y38C1AA | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | 2_point | 7058 | |||||||
Multi_point | 3584 | ||||||||
Pseudo_map_position | |||||||||
Reference (41) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |