WormBase Tree Display for Gene: WBGene00021395
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| WBGene00021395 | SMap | S_parent | Sequence | Y38C1AA | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | pnc-1 | Paper_evidence | WBPaper00029149 | |||||
| Sequence_name | Y38C1AA.3 | ||||||||
| Molecular_name | Y38C1AA.3a | ||||||||
| Y38C1AA.3a.1 | |||||||||
| CE27609 | |||||||||
| Y38C1AA.3b | |||||||||
| CE41520 | |||||||||
| Y38C1AA.3b.1 | |||||||||
| Y38C1AA.3b.2 | |||||||||
| Other_name | cog-3 | Paper_evidence | WBPaper00035288 | ||||||
| Person_evidence | WBPerson625 | ||||||||
| Y38C1AA.h | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y38C1AA.3 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | pnc-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Mar 2007 14:55:52 | WBPerson2970 | Name_change | CGC_name | pnc-1 | ||||
| 3 | 26 Feb 2010 09:52:36 | WBPerson2970 | Event | Acquires_merge | WBGene00000586 | ||||
| Name_change | Other_name | cog-3 | |||||||
| Acquires_merge | WBGene00000586 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pnc | ||||||||
| Allele | WBVar00088341 | Inferred_automatically | From strain object: MH1090 | ||||||
| WBVar01410479 | |||||||||
| WBVar01499166 | |||||||||
| WBVar01497888 | |||||||||
| WBVar01984240 | |||||||||
| WBVar01984241 | |||||||||
| WBVar00318590 | |||||||||
| WBVar00277669 | |||||||||
| WBVar01794531 | |||||||||
| WBVar01667606 | |||||||||
| WBVar00878723 | |||||||||
| WBVar00878724 | |||||||||
| WBVar00252171 | |||||||||
| WBVar00878725 | |||||||||
| WBVar00878726 | |||||||||
| WBVar00878727 | |||||||||
| WBVar00878728 | |||||||||
| WBVar02148308 | |||||||||
| WBVar00878729 | |||||||||
| WBVar00878730 | |||||||||
| WBVar00878731 | |||||||||
| WBVar00878732 | |||||||||
| WBVar00878733 | |||||||||
| WBVar00878734 | |||||||||
| WBVar00878735 | |||||||||
| WBVar00878736 | |||||||||
| WBVar00414766 | |||||||||
| WBVar01481021 | |||||||||
| WBVar00878737 | |||||||||
| WBVar00878738 | |||||||||
| WBVar01481022 | |||||||||
| WBVar00414767 | |||||||||
| WBVar01481023 | |||||||||
| WBVar00878739 | |||||||||
| WBVar00414768 | |||||||||
| WBVar01499608 | |||||||||
| WBVar00878740 | |||||||||
| WBVar00414769 | |||||||||
| WBVar00878741 | |||||||||
| WBVar00414770 | |||||||||
| WBVar00878742 | |||||||||
| WBVar00414771 | |||||||||
| WBVar01964231 | |||||||||
| WBVar00414772 | |||||||||
| WBVar00878743 | |||||||||
| WBVar00322293 | |||||||||
| WBVar00414773 | |||||||||
| WBVar00878744 | |||||||||
| WBVar00414774 | |||||||||
| WBVar00878745 | |||||||||
| WBVar00414775 | |||||||||
| WBVar00878746 | |||||||||
| WBVar00878747 | |||||||||
| WBVar00414776 | |||||||||
| WBVar00414777 | |||||||||
| WBVar00878748 | |||||||||
| WBVar00878749 | |||||||||
| WBVar00414778 | |||||||||
| WBVar00878750 | |||||||||
| WBVar00414779 | |||||||||
| WBVar00414780 | |||||||||
| WBVar00878751 | |||||||||
| WBVar00414781 | |||||||||
| WBVar00878752 | |||||||||
| WBVar00414782 | |||||||||
| WBVar00878753 | |||||||||
| WBVar00414783 | |||||||||
| WBVar00878754 | |||||||||
| WBVar00414784 | |||||||||
| WBVar00878755 | |||||||||
| WBVar00414785 | |||||||||
| WBVar00878756 | |||||||||
| WBVar00878757 | |||||||||
| WBVar00414786 | |||||||||
| WBVar00878758 | |||||||||
| WBVar00878759 | |||||||||
| WBVar00878760 | |||||||||
| WBVar00878761 | |||||||||
| WBVar00878762 | |||||||||
| WBVar00310005 | |||||||||
| WBVar00878763 | |||||||||
| WBVar00310006 | |||||||||
| WBVar00878764 | |||||||||
| WBVar00878765 | |||||||||
| WBVar00878766 | |||||||||
| WBVar00878767 | |||||||||
| WBVar00878768 | |||||||||
| WBVar00878769 | |||||||||
| WBVar00878770 | |||||||||
| WBVar00878771 | |||||||||
| WBVar00252054 | |||||||||
| WBVar01996086 | |||||||||
| WBVar01450033 | |||||||||
| WBVar01450034 | |||||||||
| WBVar02147834 | |||||||||
| WBVar01646839 | |||||||||
| WBVar00320438 | |||||||||
| WBVar01823372 | |||||||||
| WBVar01607395 | |||||||||
| WBVar00240054 | |||||||||
| WBVar02133141 | |||||||||
| Legacy_information | [Hanna-Rose W] cog for connection of gonad defective, anchor cell fails to clear opening between uterus and vulva, egg laying defective, about 75 percent of hermaphrodites bag | ||||||||
| Strain | WBStrain00026506 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005194 | ||||||||
| 00005195 | |||||||||
| 00005196 | |||||||||
| 00005197 | |||||||||
| 00005198 | |||||||||
| 00005199 | |||||||||
| 00005200 | |||||||||
| 00094214 | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00013336 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pnc-1 encodes, by alternative splicing, two isoforms of a putative pyrazinamidase/nicotinamidase, orthologous to budding yeast Pnc1p, that is required for normal lifespan; PNC-1 is paralogous to Y57G11C.47; because its overexpression increases survival during oxidative stress, PNC-1 may be required for oxidative resistance in vivo; pnc-1(RNAi) animals are abnormally short-lived. | Paper_evidence | WBPaper00029149 | |||||
| WBPaper00031677 | |||||||||
| WBPaper00031678 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 15 Apr 2008 00:00:00 | ||||||||
| Automated_description | Enables nicotinamidase activity. Involved in nicotinamide metabolic process. Located in cytoplasm; extracellular space; and nucleus. Expressed in several structures, including coelomocyte; epithelial cell; head ganglion; lumbar neurons; and pharyngeal cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38C1AA.3a | |||||||
| Y38C1AA.3b | |||||||||
| Corresponding_CDS_history | Y38C1AA.3:wp180 | ||||||||
| Corresponding_transcript | Y38C1AA.3a.1 | ||||||||
| Y38C1AA.3b.1 | |||||||||
| Y38C1AA.3b.2 | |||||||||
| Other_sequence | GR979013.1 | ||||||||
| SC01264 | |||||||||
| JI245882.1 | |||||||||
| Associated_feature | WBsf645740 | ||||||||
| WBsf645741 | |||||||||
| WBsf975989 | |||||||||
| WBsf975990 | |||||||||
| WBsf975991 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055984 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055980 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (13) | |||||||||
| Drives_construct | WBCnstr00000157 | ||||||||
| WBCnstr00019360 | |||||||||
| Construct_product | WBCnstr00000157 | ||||||||
| WBCnstr00019360 | |||||||||
| WBCnstr00019364 | |||||||||
| WBCnstr00019368 | |||||||||
| WBCnstr00019372 | |||||||||
| WBCnstr00019413 | |||||||||
| WBCnstr00019415 | |||||||||
| WBCnstr00019417 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction (100) | |||||||||
| Map_info | Map | IV | Position | -26.8555 | Error | 0.00358 | |||
| Positive | Positive_clone | Y38C1AA | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | 2_point | 7058 | |||||||
| Multi_point | 3584 | ||||||||
| Pseudo_map_position | |||||||||
| Reference (41) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
