Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00021395

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00021395SMapS_parentSequenceY38C1AA
IdentityVersion3
NameCGC_namepnc-1Paper_evidenceWBPaper00029149
Sequence_nameY38C1AA.3
Molecular_nameY38C1AA.3a
Y38C1AA.3a.1
CE27609
Y38C1AA.3b
CE41520
Y38C1AA.3b.1
Y38C1AA.3b.2
Other_namecog-3Paper_evidenceWBPaper00035288
Person_evidenceWBPerson625
Y38C1AA.hCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y38C1AA.3Accession_evidenceNDBBX284604
Public_namepnc-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
209 Mar 2007 14:55:52WBPerson2970Name_changeCGC_namepnc-1
326 Feb 2010 09:52:36WBPerson2970EventAcquires_mergeWBGene00000586
Name_changeOther_namecog-3
Acquires_mergeWBGene00000586
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpnc
Allele (101)
Legacy_information[Hanna-Rose W] cog for connection of gonad defective, anchor cell fails to clear opening between uterus and vulva, egg laying defective, about 75 percent of hermaphrodites bag
StrainWBStrain00026506
RNASeq_FPKM (74)
GO_annotation00005194
00005195
00005196
00005197
00005198
00005199
00005200
00094214
Ortholog (31)
ParalogWBGene00013336Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionpnc-1 encodes, by alternative splicing, two isoforms of a putative pyrazinamidase/nicotinamidase, orthologous to budding yeast Pnc1p, that is required for normal lifespan; PNC-1 is paralogous to Y57G11C.47; because its overexpression increases survival during oxidative stress, PNC-1 may be required for oxidative resistance in vivo; pnc-1(RNAi) animals are abnormally short-lived.Paper_evidenceWBPaper00029149
WBPaper00031677
WBPaper00031678
Curator_confirmedWBPerson567
Date_last_updated15 Apr 2008 00:00:00
Automated_descriptionEnables nicotinamidase activity. Involved in nicotinamide metabolic process. Located in cytoplasm; extracellular space; and nucleus. Expressed in several structures, including coelomocyte; epithelial cell; head ganglion; lumbar neurons; and pharyngeal cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY38C1AA.3a
Y38C1AA.3b
Corresponding_CDS_historyY38C1AA.3:wp180
Corresponding_transcriptY38C1AA.3a.1
Y38C1AA.3b.1
Y38C1AA.3b.2
Other_sequenceGR979013.1
SC01264
JI245882.1
Associated_featureWBsf645740
WBsf645741
WBsf975989
WBsf975990
WBsf975991
Experimental_infoRNAi_resultWBRNAi00055984Inferred_automaticallyRNAi_primary
WBRNAi00055980Inferred_automaticallyRNAi_primary
Expr_pattern (13)
Drives_constructWBCnstr00000157
WBCnstr00019360
Construct_productWBCnstr00000157
WBCnstr00019360
WBCnstr00019364
WBCnstr00019368
WBCnstr00019372
WBCnstr00019413
WBCnstr00019415
WBCnstr00019417
Microarray_results (18)
Expression_cluster (125)
InteractionWBInteraction000046241
WBInteraction000125104
WBInteraction000134493
WBInteraction000135346
WBInteraction000137377
WBInteraction000138549
WBInteraction000143178
WBInteraction000144653
WBInteraction000147839
WBInteraction000151054
WBInteraction000156662
WBInteraction000161522
WBInteraction000168674
WBInteraction000171538
WBInteraction000174656
WBInteraction000175228
WBInteraction000175229
WBInteraction000176098
WBInteraction000176111
WBInteraction000180105
WBInteraction000186228
WBInteraction000191180
WBInteraction000196555
WBInteraction000202225
WBInteraction000211282
WBInteraction000218756
WBInteraction000218757
WBInteraction000219216
WBInteraction000228350
WBInteraction000229085
WBInteraction000232283
WBInteraction000250556
WBInteraction000252682
WBInteraction000257413
WBInteraction000257414
WBInteraction000279391
WBInteraction000279392
WBInteraction000279613
WBInteraction000285351
WBInteraction000294532
WBInteraction000294731
WBInteraction000297714
WBInteraction000305836
WBInteraction000306988
WBInteraction000307745
WBInteraction000317086
WBInteraction000318919
WBInteraction000324443
WBInteraction000332850
WBInteraction000333300
WBInteraction000334917
WBInteraction000348997
WBInteraction000349731
WBInteraction000351598
WBInteraction000352468
WBInteraction000355451
WBInteraction000356160
WBInteraction000363132
WBInteraction000368297
WBInteraction000389792
WBInteraction000399944
WBInteraction000406177
WBInteraction000413034
WBInteraction000414594
WBInteraction000417896
WBInteraction000422848
WBInteraction000429110
WBInteraction000449189
WBInteraction000451233
WBInteraction000462806
WBInteraction000463438
WBInteraction000463514
WBInteraction000463853
WBInteraction000464229
WBInteraction000464710
WBInteraction000466421
WBInteraction000466809
WBInteraction000467800
WBInteraction000468439
WBInteraction000468753
WBInteraction000468905
WBInteraction000469564
WBInteraction000470653
WBInteraction000470785
WBInteraction000471117
WBInteraction000471217
WBInteraction000471317
WBInteraction000471394
WBInteraction000471710
WBInteraction000471770
WBInteraction000473617
WBInteraction000473967
WBInteraction000474433
WBInteraction000521675
WBInteraction000521676
WBInteraction000524229
WBInteraction000569511
WBInteraction000586249
WBInteraction000586250
WBInteraction000586251
Map_infoMapIVPosition-26.8555Error0.00358
PositivePositive_cloneY38C1AAInferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point7058
Multi_point3584
Pseudo_map_position
Reference (41)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene