WormBase Tree Display for Gene: WBGene00021395
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| WBGene00021395 | SMap | S_parent | Sequence | Y38C1AA | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | pnc-1 | Paper_evidence | WBPaper00029149 | |||||
| Sequence_name | Y38C1AA.3 | ||||||||
| Molecular_name | Y38C1AA.3a | ||||||||
| Y38C1AA.3a.1 | |||||||||
| CE27609 | |||||||||
| Y38C1AA.3b | |||||||||
| CE41520 | |||||||||
| Y38C1AA.3b.1 | |||||||||
| Y38C1AA.3b.2 | |||||||||
| Other_name | cog-3 | Paper_evidence | WBPaper00035288 | ||||||
| Person_evidence | WBPerson625 | ||||||||
| Y38C1AA.h | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y38C1AA.3 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | pnc-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Mar 2007 14:55:52 | WBPerson2970 | Name_change | CGC_name | pnc-1 | ||||
| 3 | 26 Feb 2010 09:52:36 | WBPerson2970 | Event | Acquires_merge | WBGene00000586 | ||||
| Name_change | Other_name | cog-3 | |||||||
| Acquires_merge | WBGene00000586 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pnc | ||||||||
| Allele (101) | |||||||||
| Legacy_information | [Hanna-Rose W] cog for connection of gonad defective, anchor cell fails to clear opening between uterus and vulva, egg laying defective, about 75 percent of hermaphrodites bag | ||||||||
| Strain | WBStrain00026506 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005194 | ||||||||
| 00005195 | |||||||||
| 00005196 | |||||||||
| 00005197 | |||||||||
| 00005198 | |||||||||
| 00005199 | |||||||||
| 00005200 | |||||||||
| 00094214 | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00013336 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pnc-1 encodes, by alternative splicing, two isoforms of a putative pyrazinamidase/nicotinamidase, orthologous to budding yeast Pnc1p, that is required for normal lifespan; PNC-1 is paralogous to Y57G11C.47; because its overexpression increases survival during oxidative stress, PNC-1 may be required for oxidative resistance in vivo; pnc-1(RNAi) animals are abnormally short-lived. | Paper_evidence | WBPaper00029149 | |||||
| WBPaper00031677 | |||||||||
| WBPaper00031678 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 15 Apr 2008 00:00:00 | ||||||||
| Automated_description | Enables nicotinamidase activity. Involved in nicotinamide metabolic process. Located in cytoplasm; extracellular space; and nucleus. Expressed in several structures, including coelomocyte; epithelial cell; head ganglion; lumbar neurons; and pharyngeal cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38C1AA.3a | |||||||
| Y38C1AA.3b | |||||||||
| Corresponding_CDS_history | Y38C1AA.3:wp180 | ||||||||
| Corresponding_transcript | Y38C1AA.3a.1 | ||||||||
| Y38C1AA.3b.1 | |||||||||
| Y38C1AA.3b.2 | |||||||||
| Other_sequence | GR979013.1 | ||||||||
| SC01264 | |||||||||
| JI245882.1 | |||||||||
| Associated_feature | WBsf645740 | ||||||||
| WBsf645741 | |||||||||
| WBsf975989 | |||||||||
| WBsf975990 | |||||||||
| WBsf975991 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055984 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055980 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (13) | |||||||||
| Drives_construct | WBCnstr00000157 | ||||||||
| WBCnstr00019360 | |||||||||
| Construct_product | WBCnstr00000157 | ||||||||
| WBCnstr00019360 | |||||||||
| WBCnstr00019364 | |||||||||
| WBCnstr00019368 | |||||||||
| WBCnstr00019372 | |||||||||
| WBCnstr00019413 | |||||||||
| WBCnstr00019415 | |||||||||
| WBCnstr00019417 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction (100) | |||||||||
| Map_info | Map | IV | Position | -26.8555 | Error | 0.00358 | |||
| Positive | Positive_clone | Y38C1AA | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | 2_point | 7058 | |||||||
| Multi_point | 3584 | ||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010658 | ||||||||
| WBPaper00011242 | |||||||||
| WBPaper00026151 | |||||||||
| WBPaper00028466 | |||||||||
| WBPaper00029149 | |||||||||
| WBPaper00029257 | |||||||||
| WBPaper00030579 | |||||||||
| WBPaper00032599 | |||||||||
| WBPaper00032600 | |||||||||
| WBPaper00033824 | |||||||||
| WBPaper00033913 | |||||||||
| WBPaper00033933 | |||||||||
| WBPaper00035288 | |||||||||
| WBPaper00037411 | |||||||||
| WBPaper00037827 | |||||||||
| WBPaper00038945 | |||||||||
| WBPaper00038966 | |||||||||
| WBPaper00039046 | |||||||||
| WBPaper00039088 | |||||||||
| WBPaper00039489 | |||||||||
| WBPaper00039819 | |||||||||
| WBPaper00043085 | |||||||||
| WBPaper00043104 | |||||||||
| WBPaper00043212 | |||||||||
| WBPaper00043637 | |||||||||
| WBPaper00043644 | |||||||||
| WBPaper00043645 | |||||||||
| WBPaper00045161 | |||||||||
| WBPaper00045808 | |||||||||
| WBPaper00047595 | |||||||||
| WBPaper00047690 | |||||||||
| WBPaper00047700 | |||||||||
| WBPaper00047701 | |||||||||
| WBPaper00047779 | |||||||||
| WBPaper00048525 | |||||||||
| WBPaper00051307 | |||||||||
| WBPaper00051816 | |||||||||
| WBPaper00059770 | |||||||||
| WBPaper00060923 | |||||||||
| WBPaper00061981 | |||||||||
| WBPaper00062473 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
