WormBase Tree Display for Gene: WBGene00021247

WBGene00021247 SMap: S_parent: Sequence: Y22D7AL
  Identity: Version: 1
    Name: Sequence_name: Y22D7AL.9
      Molecular_name: Y22D7AL.9
        Y22D7AL.9.1
        CE37423
        Y22D7AL.9.2
      Other_name: CELE_Y22D7AL.9 Accession_evidence: NDB BX284603
      Public_name: Y22D7AL.9
    DB_info: Database: AceView gene 3C698
        WormQTL gene WBGene00021247
        WormFlux gene WBGene00021247
        NDB locus_tag CELE_Y22D7AL.9
        Panther gene CAEEL|WormBase=WBGene00021247|UniProtKB=Q965Q2
          family PTHR10098
        NCBI gene 175314
        RefSeq protein NM_065026.9
        TREEFAM TREEFAM_ID TF344255
        TrEMBL UniProtAcc Q965Q2
        UniProt_GCRP UniProtAcc Q965Q2
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (161)
    RNASeq_FPKM (74)
    Ortholog: WBGene00191027 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
      WBGene00032787 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
      WBGene00067903 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00122814 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
      WBGene00229481 Brugia malayi From_analysis: WormBase-Compara
      Pan_g18126 Panagrellus redivivus From_analysis: WormBase-Compara
      chrIII_pilon.g6982 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00244816 Onchocerca volvulus From_analysis: WormBase-Compara
    Paralog: WBGene00000092 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004507 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including Caaaaa; Caaaap; Caaapa; Caaapp; and arc ant V based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including Zidovudine; metformin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Tetratricopeptide-like helical domain superfamily and Tetratricopeptide repeat. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y22D7AL.9
    Corresponding_CDS_history: Y22D7AL.9:wp130
    Corresponding_transcript: Y22D7AL.9.1
      Y22D7AL.9.2
    Other_sequence: EW743854.1
    Associated_feature: WBsf991339
      WBsf991340
      WBsf991341
      WBsf1014268
  Experimental_info: RNAi_result: WBRNAi00055674 Inferred_automatically: RNAi_primary
      WBRNAi00106369 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017960
      Expr1039263
      Expr1159200
      Expr2007155
      Expr2025387
    Microarray_results (18)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037682:sma-2_upregulated
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00040560:hpl-2_L3_upregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_RNAseq
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_downregulated
      WBPaper00045861:ash-2(tm1095)_upregulated
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00046024:sleep_downregulated_oscillating
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050094:mes-2(bn11)_downregulated
      WBPaper00050094:mes-6(bn66)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051265:F1_hrde-1(tm1200)_downregulated
      WBPaper00051265:F4_hrde-1(tm1200)_downregulated
      WBPaper00051305:vit-2(ac3)_upregulated
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00052885:hrde-1(tm1200)-emb-4(qm31)_regulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster3
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:sod-2(ok1030)_upregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rapamycin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00056165:mina-1(ok1521)_upregulated_transcript
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056293:rpl-5(0)-rpl-33(0)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056617:adr-1_upregulated_L4_transcript
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058969:RIS_depleted
      WBPaper00059605:mut-16(pk710)_downregulated
      WBPaper00060084:cco-1(RNAi)_downregulated_N2
      WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:X.citri_downregulated
      WBPaper00061340:hyp1V_and_ant_arc_V
      WBPaper00061340:hyp3
      WBPaper00061340:hyp7_C_lineage
      WBPaper00061340:P_cell
      WBPaper00061340:Tail_hypodermis
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061466:nath-10(icb99)_downregulated
      WBPaper00061466:nath-10(icb102)_downregulated
      WBPaper00061527:lst-4_22151-F46F11.6_12556
      WBPaper00061527:sre-33-ZK1025.1_8337
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064315:mes-3(bn199)_downregulated_EGCs
      WBPaper00064315:mes-4(bn73)_downregulated_EGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065149:lin-52(n771)_upregulated
      WBPaper00065945:epidermis-rpoa-2(-)_upregulated_transcript
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00025032:cluster_73
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00034739:N2lessDR1350
      WBPaper00036286:Pattern_H
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00039866:ClassComp_daf-19_upregulated
      WBPaper00040184:hcf-1up_sir-2.1up_daf-2up
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042236:flcn-1(ok975)_upregulated
      WBPaper00042258:DA1877_downregulated_GravidAdult
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00051387:Triclosan_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
      WBPaper00057098:SiO2-nanoparticles_upregulated
  Map_info: Positive: Positive_clone: Y22D7AL Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III -20.2791
  Method: Gene