WormBase Tree Display for Gene: WBGene00020612

WBGene00020612 SMap: S_parent: Sequence: T20D4
  Identity: Version: 2
    Name: CGC_name: arrd-22 Person_evidence: WBPerson261
            WBPerson522
      Sequence_name: T20D4.6
      Molecular_name: T20D4.6
        T20D4.6.1
        CE13790
      Other_name: CELE_T20D4.6 Accession_evidence: NDB BX284605
      Public_name: arrd-22
    DB_info: Database: AceView gene 5D885
        WormQTL gene WBGene00020612
        WormFlux gene WBGene00020612
        NDB locus_tag CELE_T20D4.6
        Panther gene CAEEL|WormBase=WBGene00020612|UniProtKB=P91469
          family PTHR11188
        NCBI gene 188642
        RefSeq protein NM_071554.7
        TrEMBL UniProtAcc P91469
        UniProt_GCRP UniProtAcc P91469
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 19 Jul 2010 16:45:42 WBPerson2970 Name_change: CGC_name: arrd-22
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: arrd
    Allele (125)
    RNASeq_FPKM (74)
    GO_annotation: 00051124
      00051125
    Ortholog: WBGene00135027 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00131126 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00057560 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00150178 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00039624 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039625 Caenorhabditis briggsae From_analysis: WormBase-Compara
      CBOVI.g12639 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g18958 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g5116 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g5117 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g5118 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16900 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g16901 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17243 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20497 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9003 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g14815 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g20621 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5529 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g5530 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00113.g4709 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g6625 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_II.g6626 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_II.g6627 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold586.g4908 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00126.g5026 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00129.g5128 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00129.g5129 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06833 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_10867 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005823 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04013 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_20074900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g13741 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00057559 Caenorhabditis remanei From_analysis: WormBase-Compara
      SGD:S000001918 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000000197 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000003013 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000003620 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000001729 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000005544 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000005849 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000006234 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      FB:FBgn0037465 Drosophila melanogaster From_analysis: Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0037517 Drosophila melanogaster From_analysis: Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0037518 Drosophila melanogaster From_analysis: Hieranoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0037521 Drosophila melanogaster From_analysis: Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0037853 Drosophila melanogaster From_analysis: OMA
            OrthoFinder
            Panther
      FB:FBgn0042102 Drosophila melanogaster From_analysis: Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0042103 Drosophila melanogaster From_analysis: Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0042104 Drosophila melanogaster From_analysis: Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0042105 Drosophila melanogaster From_analysis: Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
      ZFIN:ZDB-GENE-030131-7146 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoInspector
            SonicParanoid
      ZFIN:ZDB-GENE-050417-447 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoInspector
      ZFIN:ZDB-GENE-030925-15 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            Panther
      HGNC:25225 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoInspector
      HGNC:28633 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            Panther
      MGI:1918057 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            SonicParanoid
      MGI:2446136 Mus musculus From_analysis: EnsEMBL-Compara
            OMA
            Panther
      RGD:1309961 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
            Panther
    Paralog (29)
    Structured_description: Automated_description: Predicted to be involved in protein transport. Predicted to be located in cytoplasm. Is an ortholog of human ARRDC1 (arrestin domain containing 1) and ARRDC2 (arrestin domain containing 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T20D4.6
    Corresponding_transcript: T20D4.6.1
    Associated_feature: WBsf999614
      WBsf231571
  Experimental_info: RNAi_result: WBRNAi00018917 Inferred_automatically: RNAi_primary
      WBRNAi00053634 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1157191
      Expr2009420
      Expr2027656
    Drives_construct: WBCnstr00025008
    Construct_product: WBCnstr00025008
    Microarray_results (16)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037682:sma-2_sma-4_upregulated
      WBPaper00037946:LIN-39_interacting
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:A-class-motor-neurons_larva_enriched
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:germline-precursors_embryo_enriched
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:flat_dev_expression
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00045390:ubc-9(RNAi)_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00048690:hermaphrodite-Z1-Z4_enriched
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049736:daf-2(e1370)_downregulated_15deg-then-25deg(12hr)
      WBPaper00050053:muscle_enriched_Day4
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050163:let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:body-wall-muscle_specific
      WBPaper00051245:cytoplasm_specific
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053664:ins-11(tm1053)_downregulated
      WBPaper00053909:N2_vs_CB4856_upregulated
      WBPaper00054872:egl-9(sa307)_downregulated
      WBPaper00055103:thoc-5(wy822)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
      WBPaper00057265:metaformin_downregulated_OP50-MR
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:spn-4(tm291)_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059739:hira-1(gk835598)_downregulated_L1
      WBPaper00059763:neuron_expressed
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061203:let-418(n3536)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061340:XXX
      WBPaper00061405:S.aureus_downregulated_starvation
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:flp-5-F17C11.2
      WBPaper00061651:DB_enriched
      WBPaper00061699:daf-18(ok480)_upregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062345:bortezomib_4h_downregulated_N2
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062590:Aging_downregulated_neuron
      WBPaper00062590:Aging_upregulated_coelomocyte
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064130:Beta-Amyloid_8h_downregulated_mRNA
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064769:him-17(me24)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065841:75_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066085:sin-3(tm1276)_upregulated
      cgc4489_group_20
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00030839:Larval_A_Class
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00032948:FedUp
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00035084:L1_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00035227:heat_shock_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036286:Pattern_I
      WBPaper00037695:WC_5-day
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00041002:HQ_3d_2.0mM_Down
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00050538:Fasting_upregulated
      WBPaper00050538:Fasting_upregulated_cholesterol-dependent
      [cgc6390]:Cluster_C
    Interaction: WBInteraction000114934
      WBInteraction000224960
      WBInteraction000346130
  Map_info: Map: V Position: -11.7947 Error: 0.016175
    Positive: Positive_clone: T20D4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene