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WormBase Tree Display for Gene: WBGene00020404

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Name Class

WBGene00020404SMapS_parentSequenceT10B11
IdentityVersion1
NameSequence_nameT10B11.8
Molecular_nameT10B11.8a
T10B11.8a.1
CE37405
T10B11.8b
CE43979
T10B11.8b.1
Other_nameCELE_T10B11.8Accession_evidenceNDBBX284601
Public_nameT10B11.8
DB_infoDatabaseAceViewgene1H528
WormQTLgeneWBGene00020404
WormFluxgeneWBGene00020404
NDBlocus_tagCELE_T10B11.8
PanthergeneCAEEL|WormBase=WBGene00020404|UniProtKB=Q9TZH5
familyPTHR22670
NCBIgene172425
RefSeqproteinNM_182032.5
NM_059582.4
TREEFAMTREEFAM_IDTF343470
TrEMBLUniProtAccQ9TZH5
H2KZ50
UniProt_GCRPUniProtAccQ9TZH5
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (28)
RNASeq_FPKM (74)
Ortholog (20)
ParalogWBGene00009185Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015937Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00016947Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00019972Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABalppppppp; GLR; RIC; germ line; and head mesodermal cell based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including skn-1; dpy-10; and hsf-1 based on microarray and RNA-seq studies. Is affected by eight chemicals including Zidovudine; allantoin; and Sirolimus based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST10B11.8a
T10B11.8b
Corresponding_CDS_historyT10B11.8a:wp102
T10B11.8a:wp130
T10B11.8a:wp145
T10B11.8b:wp145
Corresponding_transcriptT10B11.8a.1
T10B11.8b.1
Other_sequenceCSC02027_1
CBC02521_1
CRC04857_1
FD515761.1
CR03050
Associated_featureWBsf649267
WBsf219658
Experimental_infoRNAi_resultWBRNAi00081099Inferred_automaticallyRNAi_primary
WBRNAi00004194Inferred_automaticallyRNAi_primary
WBRNAi00053002Inferred_automaticallyRNAi_primary
WBRNAi00053001Inferred_automaticallyRNAi_primary
WBRNAi00117094Inferred_automaticallyRNAi_primary
WBRNAi00035414Inferred_automaticallyRNAi_primary
WBRNAi00061583Inferred_automaticallyRNAi_primary
WBRNAi00004201Inferred_automaticallyRNAi_primary
Expr_patternExpr1012163
Expr1038898
Expr1156604
Expr2006062
Expr2024276
Drives_constructWBCnstr00025165
Construct_productWBCnstr00025165
Microarray_results (19)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032097:CGH-1-associated-mRNA
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00035269:cde-1_regulated
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00046741:Garlic-Extract_upregulated_mRNA
WBPaper00048988:neuron_expressed
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050234:lin-28(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00051265:F4_morc-1(tm6048)_upregulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053295:lin-22(icb38)_downregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00054758:alg-1(gk204)_downregulated
WBPaper00055334:DLC-1_interacting
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00055941:atfs-1(et15)_downregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056284:ints-5(RNAi)_downregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:hmc_biased
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00059027:neuron-synapses_enriched
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060661:sensory-neuron_depleted
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061203:let-418(n3536)_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061340:Germline
WBPaper00061340:GLR
WBPaper00061340:Neuroblast_ASJ_AUA
WBPaper00061340:Neuroblast_AVG_RIR
WBPaper00061340:RIC
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061527:T22D1.5-inx-14
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062590:Aging_downregulated_neuron
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064716:paraquat_upregulated
WBPaper00064769:him-17(me24)_downregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_2
cgc4489_group_9
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025032:cluster_1
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00032165:A_to_C_transit_decreased
WBPaper00032165:differentially_expressed_with_age_medoid_5
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_B
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00040963:TA300_down
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_allantoin_upregulated
WBPaper00051387:Triclosan_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc5767]:cluster_3
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MD_pd(53_min)
[cgc5767]:expression_class_SM
[cgc5767]:expression_class_SMD
[cgc6390]:Cluster_E
[cgc6390]:oogenesis-enriched
Interaction (70)
Map_infoPositivePositive_cloneT10B11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionI1.57066
MethodGene