WormBase Tree Display for Gene: WBGene00019844
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| WBGene00019844 | SMap | S_parent | Sequence | R03E9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | abts-4 | Person_evidence | WBPerson2233 | |||||
| Sequence_name | R03E9.3 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_R03E9.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | abts-4 | ||||||||
| DB_info | Database | AceView | gene | XH366 | |||||
| WormQTL | gene | WBGene00019844 | |||||||
| WormFlux | gene | WBGene00019844 | |||||||
| NDB | locus_tag | CELE_R03E9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019844|UniProtKB=Q58QG8 | |||||||
| family | PTHR11453 | ||||||||
| NCBI | gene | 180943 | |||||||
| RefSeq | protein | NM_001029655.6 | |||||||
| NM_001392793.1 | |||||||||
| NM_001129697.5 | |||||||||
| NM_001129698.4 | |||||||||
| TrEMBL | UniProtAcc | Q45EK3 | |||||||
| H2L0C4 | |||||||||
| Q58G79 | |||||||||
| Q58QG8 | |||||||||
| UniProt_GCRP | UniProtAcc | Q58QG8 | |||||||
| OMIM | gene | 109280 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 19 Jan 2005 16:30:54 | WBPerson2970 | Name_change | CGC_name | abts-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abts | ||||||||
| Allele (211) | |||||||||
| Strain | WBStrain00002034 | ||||||||
| WBStrain00002500 | |||||||||
| WBStrain00031734 | |||||||||
| WBStrain00031735 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (53) | |||||||||
| Paralog | WBGene00009920 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009929 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019018 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | abts-4 encodes an anion transporter; ABTS-4::GFP fusion proteins are expressed solely in the intestine, with highest levels seen in the most anterior and posterior gut cells and subcellular localization restricted to the basolateral membrane. | Paper_evidence | WBPaper00025075 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 13 Dec 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable transmembrane transporter activity. Predicted to be involved in bicarbonate transport; regulation of intracellular pH; and transmembrane transport. Located in basolateral plasma membrane. Human ortholog(s) of this gene implicated in several diseases, including glucosephosphate dehydrogenase deficiency; hereditary elliptocytosis; and renal tubular acidosis. Is an ortholog of human SLC4A2 (solute carrier family 4 member 2) and SLC4A3 (solute carrier family 4 member 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:14219 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11027) | ||||
| DOID:2862 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11027) | ||||||
| DOID:13533 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11028) | ||||||
| DOID:12971 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11027) | ||||||
| DOID:589 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11027) | ||||||
| DOID:2373 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11027) | ||||||
| Molecular_info | Corresponding_CDS | R03E9.3a | |||||||
| R03E9.3b | |||||||||
| R03E9.3c | |||||||||
| R03E9.3d | |||||||||
| Corresponding_CDS_history | R03E9.3:wp128 | ||||||||
| R03E9.3a:wp146 | |||||||||
| R03E9.3b:wp146 | |||||||||
| Corresponding_transcript | R03E9.3a.1 | ||||||||
| R03E9.3b.1 | |||||||||
| R03E9.3c.1 | |||||||||
| R03E9.3d.1 | |||||||||
| Other_sequence | JO472532.1 | ||||||||
| MC00028 | |||||||||
| JI165217.1 | |||||||||
| OVC01538_1 | |||||||||
| AI151562.1 | |||||||||
| Associated_feature (16) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00051183 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017357 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1439 | ||||||||
| Chronogram1883 | |||||||||
| Expr3245 | |||||||||
| Expr3255 | |||||||||
| Expr6451 | |||||||||
| Expr1023311 | |||||||||
| Expr1038607 | |||||||||
| Expr1154891 | |||||||||
| Expr2009102 | |||||||||
| Expr2027338 | |||||||||
| Drives_construct | WBCnstr00002818 | ||||||||
| WBCnstr00004433 | |||||||||
| WBCnstr00011248 | |||||||||
| WBCnstr00011258 | |||||||||
| WBCnstr00025552 | |||||||||
| Construct_product | WBCnstr00011258 | ||||||||
| WBCnstr00025552 | |||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (123) | |||||||||
| Interaction | WBInteraction000251098 | ||||||||
| WBInteraction000289349 | |||||||||
| WBInteraction000303761 | |||||||||
| WBInteraction000350025 | |||||||||
| WBInteraction000581124 | |||||||||
| Map_info | Map | X | Position | -2.45292 | Error | 0.014058 | |||
| Positive | Positive_clone | R03E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4258 | |||||||
| 5031 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025075 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064809 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
