WormBase Tree Display for Gene: WBGene00009929
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| WBGene00009929 | SMap | S_parent | Sequence | F52D10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | abts-2 | Person_evidence | WBPerson2233 | |||||
| Sequence_name | F52D10.1 | ||||||||
| Molecular_name | F52D10.1 | ||||||||
| F52D10.1.1 | |||||||||
| CE40613 | |||||||||
| Other_name | CELE_F52D10.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | abts-2 | ||||||||
| DB_info | Database | AceView | gene | XM209 | |||||
| WormQTL | gene | WBGene00009929 | |||||||
| WormFlux | gene | WBGene00009929 | |||||||
| NDB | locus_tag | CELE_F52D10.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009929|UniProtKB=G5EGB9 | |||||||
| family | PTHR11453 | ||||||||
| NCBI | gene | 186108 | |||||||
| RefSeq | protein | NM_077535.8 | |||||||
| TrEMBL | UniProtAcc | G5EGB9 | |||||||
| UniProt_GCRP | UniProtAcc | G5EGB9 | |||||||
| OMIM | gene | 610206 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Jan 2005 16:30:54 | WBPerson2970 | Name_change | CGC_name | abts-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abts | ||||||||
| Allele (58) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00009920 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019018 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019844 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | abts-2 encodes an anion transporter; when expressed in Xenopus oocytes, ABTS-2 does not exhibit detectable transport of chloride, sulfate, or oxolate anions; ABTS-2::GFP fusion proteins are expressed in the larval excretory cell and the adult ovaries, while an abts-2::gfp promoter fusion is seen in only one tail ganglion neuron; in intestinal cells, the ABTS-2::GFP fusion protein localizes to the basolateral membrane. | Paper_evidence | WBPaper00025075 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 13 Dec 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable transmembrane transporter activity. Predicted to be involved in monoatomic ion homeostasis and transmembrane transport. Located in basolateral plasma membrane. Expressed in dorsal-rectal ganglion neurons; gonadal sheath cell; and tail neurons. Human ortholog(s) of this gene implicated in Fuchs' endothelial dystrophy; congenital hereditary endothelial dystrophy of cornea; and corneal dystrophy-perceptive deafness syndrome. Is an ortholog of human SLC4A11 (solute carrier family 4 member 11). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060649 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16438) | ||||
| DOID:11555 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16438) | ||||||
| DOID:0111620 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16438) | ||||||
| Molecular_info | Corresponding_CDS | F52D10.1 | |||||||
| Corresponding_CDS_history | F52D10.1:wp54 | ||||||||
| F52D10.1:wp109 | |||||||||
| F52D10.1:wp155 | |||||||||
| Corresponding_transcript | F52D10.1.1 | ||||||||
| Other_sequence | SSC04413_1 | ||||||||
| SS02624 | |||||||||
| Associated_feature | WBsf1007049 | ||||||||
| WBsf236404 | |||||||||
| WBsf236405 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00066583 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015394 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047961 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032604 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram452 | ||||||||
| Expr3243 | |||||||||
| Expr3254 | |||||||||
| Expr6137 | |||||||||
| Expr1025501 | |||||||||
| Expr1151780 | |||||||||
| Expr2009100 | |||||||||
| Expr2027336 | |||||||||
| Drives_construct | WBCnstr00003945 | ||||||||
| WBCnstr00011246 | |||||||||
| WBCnstr00011257 | |||||||||
| WBCnstr00031807 | |||||||||
| Construct_product | WBCnstr00011257 | ||||||||
| WBCnstr00031807 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction | WBInteraction000032150 | ||||||||
| WBInteraction000142939 | |||||||||
| WBInteraction000296106 | |||||||||
| WBInteraction000407567 | |||||||||
| WBInteraction000543495 | |||||||||
| Map_info | Map | X | Position | 4.79868 | Error | 0.039026 | |||
| Positive | Positive_clone | F52D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5040 | |||||||
| 5432 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025075 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
