WormBase Tree Display for Gene: WBGene00019327
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WBGene00019327 | SMap | S_parent | Sequence | K02F3 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | zip-2 | Person_evidence | WBPerson1997 | |||
WBPerson460 | |||||||
Sequence_name | K02F3.4 | ||||||
Molecular_name | K02F3.4 | ||||||
K02F3.4.1 | |||||||
CE23848 | |||||||
K02F3.4.2 | |||||||
K02F3.4.3 | |||||||
Other_name | CELE_K02F3.4 | Accession_evidence | NDB | BX284603 | |||
Public_name | zip-2 | ||||||
DB_info | Database | AceView | gene | 3B453 | |||
WormQTL | gene | WBGene00019327 | |||||
WormFlux | gene | WBGene00019327 | |||||
NDB | locus_tag | CELE_K02F3.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00019327|UniProtKB=Q21148 | |||||
family | PTHR23334 | ||||||
NCBI | gene | 175240 | |||||
RefSeq | protein | NM_001384015.2 | |||||
SwissProt | UniProtAcc | Q21148 | |||||
TREEFAM | TREEFAM_ID | TF317134 | |||||
UniProt_GCRP | UniProtAcc | Q21148 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | zip | ||||||
Allele (51) | |||||||
Strain | WBStrain00037649 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (25) | |||||||
Ortholog (23) | |||||||
Paralog | WBGene00016754 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00016997 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00017755 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00021552 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | zip-2 encodes a bZIP transcription factor; ZIP-2 activity is required for regulating one branch of the immune response pathway that responds to infection by virulent strains of the bacterial pathogen Pseudomonas aeruginosa; specifically, ZIP-2 is required for inducing expression of a subset of infection response genes, including irg-1 and irg-2, and for full resistance to P. aeruginosa infection. | Paper_evidence | WBPaper00027309 | |||
WBPaper00035891 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 08 Feb 2010 00:00:00 | ||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in defense response to bacterium and positive regulation of macromolecule biosynthetic process. Predicted to be located in nucleus. Expressed in pharynx. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Modifies_disease | DOID:14330 | ||||||
Modifies_disease_in_annotation | WBDOannot00000499 | ||||||
Molecular_info | Corresponding_CDS | K02F3.4 | |||||
Corresponding_transcript (3) | |||||||
Other_sequence (25) | |||||||
Associated_feature (16) | |||||||
Gene_product_binds (249) | |||||||
Transcription_factor | WBTranscriptionFactor000223 | ||||||
Experimental_info | RNAi_result (25) | ||||||
Expr_pattern | Expr7776 | ||||||
Expr10045 | |||||||
Expr1020648 | |||||||
Expr1038353 | |||||||
Expr1153467 | |||||||
Expr2018156 | |||||||
Expr2036293 | |||||||
Drives_construct | WBCnstr00012921 | ||||||
WBCnstr00015019 | |||||||
WBCnstr00015163 | |||||||
WBCnstr00019915 | |||||||
WBCnstr00022575 | |||||||
WBCnstr00025914 | |||||||
Construct_product | WBCnstr00016820 | ||||||
WBCnstr00018893 | |||||||
WBCnstr00018894 | |||||||
WBCnstr00019915 | |||||||
WBCnstr00022575 | |||||||
WBCnstr00025914 | |||||||
Regulate_expr_cluster | WBPaper00035891:PA_induced_zip-2_dependent | ||||||
WBPaper00035891:zip-2(RNAi)_downregulated | |||||||
WBPaper00035891:zip-2(RNAi)_upregulated | |||||||
WBPaper00053605:zip-2(RNAi)_downregulated | |||||||
WBPaper00053605:zip-2(RNAi)_upregulated | |||||||
Microarray_results (21) | |||||||
Expression_cluster (221) | |||||||
Interaction (49) | |||||||
WBProcess | WBbiopr:00000008 | ||||||
WBbiopr:00000039 | |||||||
Map_info | Map | III | Position | -25.7689 | |||
Positive | Positive_clone | K02F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (32) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
[200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-25.7711) | |||||||
Method | Gene |