WormBase Tree Display for Gene: WBGene00019125
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| WBGene00019125 | SMap | S_parent | Sequence | F59E12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ddl-1 | Person_evidence | WBPerson1157 | |||||
| Sequence_name | F59E12.10 | ||||||||
| Molecular_name | F59E12.10 | ||||||||
| F59E12.10.1 | |||||||||
| CE11536 | |||||||||
| F59E12.10.2 | |||||||||
| Other_name | CELE_F59E12.10 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ddl-1 | ||||||||
| DB_info | Database | AceView | gene | 2F936 | |||||
| WormQTL | gene | WBGene00019125 | |||||||
| WormFlux | gene | WBGene00019125 | |||||||
| NDB | locus_tag | CELE_F59E12.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019125|UniProtKB=O01901 | |||||||
| family | PTHR13015 | ||||||||
| NCBI | gene | 173954 | |||||||
| RefSeq | protein | NM_001383847.2 | |||||||
| SwissProt | UniProtAcc | O01901 | |||||||
| TREEFAM | TREEFAM_ID | TF318955 | |||||||
| UniProt_GCRP | UniProtAcc | O01901 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 31 Aug 2005 14:07:05 | WBPerson2970 | Name_change | CGC_name | ddl-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ddl | ||||||||
| Allele (13) | |||||||||
| Strain | WBStrain00037154 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Contained_in_operon | CEOP2198 | ||||||||
| Ortholog (30) | |||||||||
| Structured_description | Concise_description | ddl-1 encodes a coiled-coil protein orthologous to vertebrate CCD53; loss of ddl-1 activity via RNAi results in a daf-16-dependent increase in lifespan. | Paper_evidence | WBPaper00026715 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Dec 2007 00:00:00 | ||||||||
| Automated_description | Involved in cytoplasmic sequestering of protein and determination of adult lifespan. Located in cytoplasm. Expressed in body wall musculature; neurons; pharynx; spermatheca; and vulval muscle. Is an ortholog of human WASHC3 (WASH complex subunit 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F59E12.10 | |||||||
| Corresponding_transcript | F59E12.10.1 | ||||||||
| F59E12.10.2 | |||||||||
| Associated_feature | WBsf223076 | ||||||||
| Experimental_info | RNAi_result (23) | ||||||||
| Expr_pattern | Expr9955 | ||||||||
| Expr1025712 | |||||||||
| Expr1038255 | |||||||||
| Expr1152946 | |||||||||
| Expr2010825 | |||||||||
| Expr2029063 | |||||||||
| Drives_construct | WBCnstr00009739 | ||||||||
| WBCnstr00009740 | |||||||||
| WBCnstr00009741 | |||||||||
| WBCnstr00009800 | |||||||||
| WBCnstr00009801 | |||||||||
| WBCnstr00026044 | |||||||||
| Construct_product | WBCnstr00009739 | ||||||||
| WBCnstr00009740 | |||||||||
| WBCnstr00009741 | |||||||||
| WBCnstr00009801 | |||||||||
| WBCnstr00026044 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (119) | |||||||||
| Interaction (140) | |||||||||
| WBProcess | WBbiopr:00000001 | ||||||||
| Map_info | Map | II | Position | -0.995821 | Error | 0.003167 | |||
| Positive | Positive_clone | F59E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026715 | ||||||||
| WBPaper00033827 | |||||||||
| WBPaper00037442 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040689 | |||||||||
| WBPaper00044673 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061508 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
