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WormBase Tree Display for Gene: WBGene00019108

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Name Class

WBGene00019108SMapS_parentSequenceF59D6
IdentityVersion2
NameCGC_namechpf-2Person_evidenceWBPerson2233
Sequence_nameF59D6.7
Molecular_nameF59D6.7a
F59D6.7a.1
CE45471
F59D6.7b
Other_nameCELE_F59D6.7Accession_evidenceNDBBX284605
Public_namechpf-2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:01WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
214 Apr 2015 09:52:28WBPerson2970Name_changeCGC_namechpf-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classchpf
AlleleWBVar00996136
WBVar00996137
WBVar00094030
WBVar00065925
WBVar00996138
WBVar00996139
WBVar01499528
WBVar01986229
WBVar01499167
WBVar01483712
WBVar01614238
WBVar01614239
WBVar01614240
WBVar01614241
WBVar01614242
WBVar01614243
WBVar01614244
WBVar01499740
WBVar01586207
WBVar01498294
WBVar02093072
WBVar00205511
WBVar00205512
WBVar00205513
WBVar00254767
WBVar00264170
WBVar02122013
WBVar01458753
WBVar02124616
WBVar01498943
WBVar01498944
WBVar01499496
WBVar01499316
WBVar00996132
WBVar00996133
WBVar00453129
WBVar00996134
WBVar00453130
WBVar01500066
WBVar00996135
StrainWBStrain00032856
RNASeq_FPKM (74)
GO_annotation (12)
Ortholog (43)
ParalogWBGene00003941Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00014109Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00000554Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00009260Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020192Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable calcium ion binding activity. Predicted to be located in plasma membrane. Expressed in ray and in male. Human ortholog(s) of this gene implicated in spastic ataxia. Is an ortholog of human CHP1 (calcineurin like EF-hand protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050952Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:17433)
Molecular_infoCorresponding_CDSF59D6.7a
Corresponding_CDS_historyF59D6.7:wp220
Corresponding_transcriptF59D6.7b
F59D6.7a.1
Other_sequenceEX547409.1
PPC09890_1
SC00980
GR979084.1
Tcir_isotig07859
Acan_isotig17513
Associated_featureWBsf652522
WBsf668647
WBsf233455
Experimental_infoRNAi_resultWBRNAi00016100Inferred_automaticallyRNAi_primary
WBRNAi00080519Inferred_automaticallyRNAi_primary
WBRNAi00049180Inferred_automaticallyRNAi_primary
Expr_patternExpr12598
Expr1024518
Expr1038248
Expr1152926
Expr2009998
Expr2028239
Drives_constructWBCnstr00022364
WBCnstr00026059
Construct_productWBCnstr00026059
Microarray_results (16)
Expression_cluster (141)
InteractionWBInteraction000117439
WBInteraction000117442
WBInteraction000165373
WBInteraction000209483
Map_infoMapVPosition-12.7957
PositivePositive_cloneF59D6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00035228
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene