WormBase Tree Display for Gene: WBGene00018827
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| WBGene00018827 | SMap | S_parent | Sequence | F54E7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pst-2 | Person_evidence | WBPerson1705 | |||||
| Sequence_name | F54E7.1 | ||||||||
| Molecular_name | F54E7.1a | ||||||||
| F54E7.1a.1 | |||||||||
| CE01312 | |||||||||
| F54E7.1b | |||||||||
| CE40069 | |||||||||
| F54E7.1b.1 | |||||||||
| Other_name | CELE_F54E7.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | pst-2 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00018827 | |||||
| WormFlux | gene | WBGene00018827 | |||||||
| NDB | locus_tag | CELE_F54E7.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018827|UniProtKB=Q20787 | |||||||
| family | PTHR10778 | ||||||||
| NCBI | gene | 175787 | |||||||
| RefSeq | protein | NM_001047391.4 | |||||||
| NM_001047390.4 | |||||||||
| SwissProt | UniProtAcc | Q20787 | |||||||
| TREEFAM | TREEFAM_ID | TF314523 | |||||||
| UniProt_GCRP | UniProtAcc | Q20787 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 15 Dec 2006 15:03:44 | WBPerson1847 | Name_change | CGC_name | pst-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pst | ||||||||
| Allele (28) | |||||||||
| Strain | WBStrain00037570 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP3316 | ||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00004206 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00008275 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00013740 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017480 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pst-2 encodes the C. elegans ortholog of the PAPST2 PAPS (3'-phospho-adenosine-5'-phosphosulfate) transporter; a pst-2::gfp reporter fusion is first expressed in ectodermal cells at the ~350-cell stage of embryogenesis; during larval stages, expression is seen in the intestine and, in the adult stage, in the vulva, with weak expression in the hypodermis; PST-2::GFP shows partial localization to the Golgi; pst-2 can partially complement developmental defects seen in pst-1 mutants, suggesting that pst-2 encodes a functional transporter but that it likely has some non-overlapping functions with pst-1 in vivo. | Paper_evidence | WBPaper00035477 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 18 Mar 2010 00:00:00 | ||||||||
| Automated_description | Enables 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity. Involved in 3'-phosphoadenosine 5'-phosphosulfate transport. Located in Golgi cis cisterna membrane and Golgi medial cisterna membrane. Expressed in hypodermis; intestine; pharyngeal gland cell; and vulva. Is an ortholog of human SLC35B3 (solute carrier family 35 member B3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54E7.1a | |||||||
| F54E7.1b | |||||||||
| Corresponding_CDS_history | F54E7.1:wp156 | ||||||||
| Corresponding_transcript | F54E7.1a.1 | ||||||||
| F54E7.1b.1 | |||||||||
| Other_sequence (23) | |||||||||
| Associated_feature | WBsf645196 | ||||||||
| WBsf224978 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048347 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00107003 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106890 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015639 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006854 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033637 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8857 | ||||||||
| Expr8858 | |||||||||
| Expr9062 | |||||||||
| Expr9063 | |||||||||
| Expr1011065 | |||||||||
| Expr1038120 | |||||||||
| Expr1152144 | |||||||||
| Expr2015140 | |||||||||
| Expr2033378 | |||||||||
| Drives_construct | WBCnstr00013566 | ||||||||
| WBCnstr00013694 | |||||||||
| WBCnstr00013695 | |||||||||
| WBCnstr00026261 | |||||||||
| Construct_product | WBCnstr00007886 | ||||||||
| WBCnstr00007889 | |||||||||
| WBCnstr00007892 | |||||||||
| WBCnstr00007893 | |||||||||
| WBCnstr00013566 | |||||||||
| WBCnstr00013694 | |||||||||
| WBCnstr00013695 | |||||||||
| WBCnstr00017641 | |||||||||
| WBCnstr00020672 | |||||||||
| WBCnstr00026261 | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction (30) | |||||||||
| Map_info | Map | III | Position | -1.45702 | Error | 0.000643 | |||
| Positive | Positive_clone | F54E7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032785 | ||||||||
| WBPaper00034035 | |||||||||
| WBPaper00035477 | |||||||||
| WBPaper00035539 | |||||||||
| WBPaper00036358 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
