WormBase Tree Display for Gene: WBGene00013740
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| WBGene00013740 | SMap | S_parent | Sequence | Y111B2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | hut-1 | Person_evidence | WBPerson8713 | |||||
| Sequence_name | Y111B2A.20 | ||||||||
| Molecular_name | Y111B2A.20a | ||||||||
| Y111B2A.20a.1 | |||||||||
| CE24129 | |||||||||
| Y111B2A.20b | |||||||||
| CE49162 | |||||||||
| Y111B2A.20b.1 | |||||||||
| Other_name | Y111B2E.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y111B2A.20 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | hut-1 | ||||||||
| DB_info | Database | AceView | gene | 3N803 | |||||
| WormQTL | gene | WBGene00013740 | |||||||
| WormFlux | gene | WBGene00013740 | |||||||
| NDB | locus_tag | CELE_Y111B2A.20 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013740|UniProtKB=Q9BHL2 | |||||||
| family | PTHR10778 | ||||||||
| NCBI | gene | 176690 | |||||||
| RefSeq | protein | NM_001306675.1 | |||||||
| NM_067251.5 | |||||||||
| TrEMBL | UniProtAcc | Q9BHL2 | |||||||
| V6CLL6 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9BHL2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 05 Mar 2009 11:44:24 | WBPerson9133 | Name_change | CGC_name | hut-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hut | ||||||||
| Allele (30) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00004206 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00008275 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018827 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017480 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | hut-1 encodes a nucleotide sugar transporter that is related to members of the solute carrier 35B1 (SLC35B1) subfamily of SLC35 transporters; HUT-1 activity is required for proper organization of the endoplasmic reticulum and for normal larval development; in the intestine, HUT-1 localizes to the endoplasmic reticulum and the Golgi apparatus. | Paper_evidence | WBPaper00032977 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 29 Oct 2013 00:00:00 | ||||||||
| Automated_description | Predicted to enable UDP-galactose transmembrane transporter activity and UDP-glucose transmembrane transporter activity. Involved in endoplasmic reticulum organization and nematode larval development. Located in Golgi apparatus and endoplasmic reticulum. Expressed in coelomocyte; egg-laying apparatus; gonad; intestine; and pharyngeal cell. Is an ortholog of human SLC35B1 (solute carrier family 35 member B1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y111B2A.20a | |||||||
| Y111B2A.20b | |||||||||
| Corresponding_transcript | Y111B2A.20a.1 | ||||||||
| Y111B2A.20b.1 | |||||||||
| Other_sequence (61) | |||||||||
| Associated_feature | WBsf645672 | ||||||||
| WBsf659650 | |||||||||
| WBsf659651 | |||||||||
| WBsf994712 | |||||||||
| WBsf1016246 | |||||||||
| WBsf225925 | |||||||||
| WBsf225926 | |||||||||
| WBsf225927 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr8973 | ||||||||
| Expr8974 | |||||||||
| Expr1014354 | |||||||||
| Expr1036158 | |||||||||
| Expr1158883 | |||||||||
| Expr2012653 | |||||||||
| Expr2030889 | |||||||||
| Drives_construct | WBCnstr00013647 | ||||||||
| Construct_product | WBCnstr00013646 | ||||||||
| WBCnstr00013647 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (110) | |||||||||
| SAGE_tag | SAGE:aagcaattgc | Strand | Antisense | ||||||
| SAGE:aatcatccgc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:agacgccaca | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aagagcaccgatattat | Strand | Antisense | |||||||
| SAGE:aagcaattgcgagcccg | Strand | Antisense | |||||||
| SAGE:agacgccacatcatcac | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aagagcaccg | Strand | Antisense | |||||||
| SAGE:gttttttggc | Strand | Antisense | |||||||
| SAGE:aatcatccgctctctgg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (15) | |||||||||
| WBProcess | WBbiopr:00000046 | ||||||||
| WBbiopr:00000079 | |||||||||
| Map_info | Map | III | Position | 18.2218 | Error | 0.012699 | |||
| Positive | Positive_clone | Y111B2A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032977 | ||||||||
| WBPaper00033574 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
