WormBase Tree Display for Gene: WBGene00018355
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| WBGene00018355 | SMap | S_parent | Sequence | F42G2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ceh-86 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F42G2.6 | ||||||||
| Molecular_name | F42G2.6 | ||||||||
| F42G2.6.1 | |||||||||
| CE32659 | |||||||||
| F42G2.6.2 | |||||||||
| Other_name | CELE_F42G2.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ceh-86 | ||||||||
| DB_info | Database | AceView | gene | 2C718 | |||||
| WormQTL | gene | WBGene00018355 | |||||||
| WormFlux | gene | WBGene00018355 | |||||||
| NDB | locus_tag | CELE_F42G2.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018355|UniProtKB=O17102 | |||||||
| family | PTHR21504 | ||||||||
| NCBI | gene | 173597 | |||||||
| RefSeq | protein | NM_061873.7 | |||||||
| TREEFAM | TREEFAM_ID | TF319471 | |||||||
| TrEMBL | UniProtAcc | O17102 | |||||||
| UniProt_GCRP | UniProtAcc | O17102 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Sep 2011 16:40:16 | WBPerson2970 | Name_change | CGC_name | ceh-86 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (363) | |||||||||
| Possibly_affected_by | WBVar02154112 | ||||||||
| Strain | WBStrain00003384 | ||||||||
| WBStrain00049312 | |||||||||
| WBStrain00051936 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00029336 | ||||||||
| 00029337 | |||||||||
| 00029338 | |||||||||
| 00029339 | |||||||||
| 00029340 | |||||||||
| 00029341 | |||||||||
| 00123494 | |||||||||
| 00123495 | |||||||||
| Ortholog | WBGene00030253 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | |||||
| CSP40.g7453 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cnig_chr_I.g2940 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00038.g2054 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00038.g2055 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_16212 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g3685 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00119355 | Caenorhabditis japonica | From_analysis | WormBase-Compara | ||||||
| WBGene00056348 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00016457 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | ceh-86 encodes a homeodomain-containing protein with one homeodomain; it lies on chromosome II near a repetitive region where several other divergent homeobox genes are found; ceh-86(RNAi) performed in the background of C. elegans retinoblastoma pathway mutants results in a number of phenotypes that suggest ceh-86 plays a role in the normal development and/or survival of the animal; a ceh-86::gfp promoter fusion is expressed in the adult intestine. | Paper_evidence | WBPaper00027309 | |||||
| WBPaper00028945 | |||||||||
| WBPaper00006525 | |||||||||
| WBPaper00029258 | |||||||||
| WBPaper00046864 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 20 Feb 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. Predicted to be involved in autophagy. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F42G2.6 | |||||||
| Corresponding_CDS_history | F42G2.6:wp90 | ||||||||
| Corresponding_transcript | F42G2.6.1 | ||||||||
| F42G2.6.2 | |||||||||
| Associated_feature | WBsf716973 | ||||||||
| WBsf986939 | |||||||||
| WBsf986940 | |||||||||
| WBsf222766 | |||||||||
| Transcription_factor | WBTranscriptionFactor000338 | ||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr6049 | ||||||||
| Expr15653 | |||||||||
| Expr1014280 | |||||||||
| Expr1037903 | |||||||||
| Expr1150982 | |||||||||
| Expr2009910 | |||||||||
| Expr2028150 | |||||||||
| Drives_construct | WBCnstr00003853 | ||||||||
| Construct_product | WBCnstr00017340 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (153) | |||||||||
| Interaction (126) | |||||||||
| Map_info | Map | II | Position | -13.8151 | Error | 0.002949 | |||
| Positive | Positive_clone | F42G2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00028945 | |||||||||
| WBPaper00060123 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
