WormBase Tree Display for Gene: WBGene00018060

WBGene00018060 SMap: S_parent: Sequence: F35F10
  Identity: Version: 2
    Name: CGC_name: arrd-18 Person_evidence: WBPerson261
            WBPerson522
      Sequence_name: F35F10.11
      Molecular_name: F35F10.11
        F35F10.11.1
        CE09936
      Other_name: CELE_F35F10.11 Accession_evidence: NDB BX284605
      Public_name: arrd-18
    DB_info: Database: AceView gene 5D790
        WormQTL gene WBGene00018060
        WormFlux gene WBGene00018060
        NDB locus_tag CELE_F35F10.11
        Panther gene CAEEL|WormBase=WBGene00018060|UniProtKB=Q9GYT5
          family PTHR11188
        NCBI gene 178763
        RefSeq protein NM_071515.5
        TrEMBL UniProtAcc Q9GYT5
        UniProt_GCRP UniProtAcc Q9GYT5
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 19 Jul 2010 16:45:42 WBPerson2970 Name_change: CGC_name: arrd-18
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: arrd
    Allele (66)
    RNASeq_FPKM (74)
    GO_annotation: 00092980
      00092981
    Ortholog: WBGene00135027 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00131126 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00057560 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00099851 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00150178 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00039624 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039625 Caenorhabditis briggsae From_analysis: WormBase-Compara
      CBOVI.g12639 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g18958 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g5116 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g5117 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g5118 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16900 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g16901 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17243 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20497 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9003 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g14815 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g20621 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5529 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g5530 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00113.g4709 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g6625 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_II.g6626 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_II.g6627 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold586.g4908 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00126.g5026 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00129.g5128 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00129.g5129 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06833 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_10867 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005823 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04013 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_20074900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g13707 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00057559 Caenorhabditis remanei From_analysis: WormBase-Compara
      SGD:S000001918 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000000197 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000003013 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000003620 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000001729 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000005544 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000005849 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      SGD:S000006234 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      FB:FBgn0037465 Drosophila melanogaster From_analysis: Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0037517 Drosophila melanogaster From_analysis: Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0037521 Drosophila melanogaster From_analysis: Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0037853 Drosophila melanogaster From_analysis: OMA
            OrthoFinder
            Panther
      FB:FBgn0042102 Drosophila melanogaster From_analysis: Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0042103 Drosophila melanogaster From_analysis: Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0042104 Drosophila melanogaster From_analysis: Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      FB:FBgn0042105 Drosophila melanogaster From_analysis: Hieranoid
            OrthoFinder
            OrthoInspector
            Panther
      ZFIN:ZDB-GENE-030131-7146 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoInspector
            SonicParanoid
      ZFIN:ZDB-GENE-050417-447 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoInspector
      ZFIN:ZDB-GENE-030925-15 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            Panther
      HGNC:25225 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoInspector
      MGI:1918057 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            SonicParanoid
      MGI:2446136 Mus musculus From_analysis: EnsEMBL-Compara
            OMA
            Panther
      RGD:1311763 Rattus norvegicus From_analysis: EnsEMBL-Compara
            SonicParanoid
    Paralog (29)
    Structured_description: Automated_description: Predicted to be involved in protein transport. Predicted to be located in cytoplasm. Is an ortholog of human ARRDC2 (arrestin domain containing 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F35F10.11
    Corresponding_transcript: F35F10.11.1
    Other_sequence: CR01530
      CRC02889_1
    Associated_feature: WBsf999598
      WBsf233475
  Experimental_info: RNAi_result: WBRNAi00031792 Inferred_automatically: RNAi_primary
      WBRNAi00046368 Inferred_automatically: RNAi_primary
      WBRNAi00014350 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012915
      Expr1037781
      Expr1150249
      Expr2009417
      Expr2027653
    Drives_construct: WBCnstr00026808
    Construct_product: WBCnstr00026808
    Microarray_results (14)
    Expression_cluster: WBPaper00037946:EGL-5_interacting
      WBPaper00037950:A-class-motor-neurons_larva_enriched
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:coelomocytes_embryo_enriched
      WBPaper00037950:GABAergic-motor-neurons_larva_enriched
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00040420:FLP_enriched
      WBPaper00040560:hpl-2_embryo_upregulated
      WBPaper00040560:hpl-2_L3_upregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00044260:1-methylnicotinamide_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:flat_dev_expression
      WBPaper00044743:wdr-23_neuron_upregulated
      WBPaper00045316:prg-1_upregulated_L3
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00046509:htz-1(ok3099)_upregulated
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:cytoplasm_specific
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055626:pry-1(mu38)_upregulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00057265:metaformin_downregulated_OP50-MR
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059763:neuron_expressed
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061340:AIN
      WBPaper00061340:ALM_PLM
      WBPaper00061340:DA
      WBPaper00061340:DB
      WBPaper00061340:DVA
      WBPaper00061340:M_cell
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061405:S.aureus_downregulated_starvation
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:flp-5-F17C11.2
      WBPaper00061527:srj-21-srh-32
      WBPaper00061651:PVW_enriched
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062456:doxycycline_upregulated_CB4856_protein
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4489_group_4
      WBPaper00025141:unc-4::GFP_Enriched_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030839:Embryo_A_Class
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00034739:RIL17moreRIL14
      WBPaper00035227:heat_shock_regulated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_D
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00048989:N2_allantoin_downregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:Cluster_C
    Interaction: WBInteraction000203020
      WBInteraction000224960
      WBInteraction000434247
      WBInteraction000581041
  Map_info: Map: V Position: -12.1963 Error: 0.012694
    Positive: Positive_clone: F35F10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene