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WormBase Tree Display for Gene: WBGene00017247

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Name Class

WBGene00017247SMapS_parentSequenceF08D12
IdentityVersion2
NameSequence_nameF08D12.3
Molecular_nameF08D12.3
F08D12.3.1
CE09236
Other_nameCELE_F08D12.3Accession_evidenceNDBBX284602
Public_nameF08D12.3
DB_infoDatabaseAceViewgene2D69C
2D69
WormQTLgeneWBGene00017247
WormFluxgeneWBGene00017247
NDBlocus_tagCELE_F08D12.3
PanthergeneCAEEL|WormBase=WBGene00017247|UniProtKB=P91237
familyPTHR34150
NCBIgene3565148
RefSeqproteinNM_061962.6
TrEMBLUniProtAccP91237
UniProt_GCRPUniProtAccP91237
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:58WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
230 Jun 2014 13:23:05WBPerson1983EventSplit_intoWBGene00043239
Split_intoWBGene00043239
StatusLive
Gene_infoBiotypeSO:0001217
Allele (34)
RNASeq_FPKM (74)
OrthologWBGene00092167Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00105988Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
FL83_17189Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_21154Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006780Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_006784Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrII_pilon.g3784Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00079338Caenorhabditis remaneiFrom_analysisWormBase-Compara
ParalogWBGene00009604Caenorhabditis elegansFrom_analysisTreeFam
WBGene00013090Caenorhabditis elegansFrom_analysisTreeFam
WBGene00017246Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00022445Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00022440Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00022439Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in ABalaaaala; ABalaapaaa; pharyngeal gland cell; and pharyngeal neurons based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and tiling array studies. Is affected by twelve chemicals including rotenone; D-glucose; and stavudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: CC domain.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF08D12.3
Corresponding_CDS_historyF08D12.3b:wp244
Corresponding_transcriptF08D12.3.1
Associated_featureWBsf644023
WBsf987054
WBsf987055
WBsf987056
WBsf987057
WBsf987058
WBsf987059
WBsf1011770
WBsf1011771
WBsf220952
Experimental_infoRNAi_resultWBRNAi00043991Inferred_automaticallyRNAi_primary
WBRNAi00012881Inferred_automaticallyRNAi_primary
Expr_patternExpr1028836
Expr1147963
Expr2002287
Expr2020506
Drives_constructWBCnstr00027457
Construct_productWBCnstr00027457
Microarray_results (23)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037682:sma-2_downregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044743:wdr-23_neuron_upregulated
WBPaper00045050:csr-1(hypomorph)_upregulated
WBPaper00045571:germline-ablation_upregulated
WBPaper00045774:clk-1_upregulated
WBPaper00045934:wrn-1(gk99)_upregulated
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048988:neuron_expressed
WBPaper00049217:TCER-1_upregulated
WBPaper00049368:daf-2(e1370)_downregulated
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049942:HeatShock_upregulated_hsf-1(+)
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00051265:F4_hrde-1(tm1200)_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054758:alg-1(gk204)_downregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055226:ADR-2_target_N2
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055386:daf-2(e1370)_downregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055648:nerve-ring_expressed
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056617:adr-1_upregulated_L4_transcript
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00057068:numr-1(RNAi)_downregulated
WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058948:npr-8(ok1439)_downregulated_OP50
WBPaper00058948:npr-8(ok1439)_downregulated_PA14
WBPaper00058969:RIS_depleted
WBPaper00059117:B.subtilis_upregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059605:simr-1(cmp36)_upregulated
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00059895:wounding_upregulated
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060661:hypoxia_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061007:X.citri_downregulated
WBPaper00061340:AIN_parent
WBPaper00061340:g1A
WBPaper00061340:g2
WBPaper00061340:Pharyngeal_neuron
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:M04G7.1-R06F6.7
WBPaper00061527:srj-21-srh-32
WBPaper00061753:csr-1(tor159)_downregulated_25C
WBPaper00061753:csr-1(tor159)_upregulated_20C
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:daf-16(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065149:lin-52(n771)_downregulated
WBPaper00065258:anchor-cell_enriched
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065623:99
WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
WBPaper00065841:78_0
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066118:cyclobutrifluram_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
cgc4489_group_17
WBPaper00006465:IV_ethanol_late_repression
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00030985:Serratia_marcesens_downregulated
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00034739:N2lessDR1350
WBPaper00034757:up_by_oxidative_stress
WBPaper00039851:HK_C_albicans_vs_HK_OP50
WBPaper00039851:Live_C_albicans_vs_HK_OP50
WBPaper00040821:Au-NP_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00040963:TA300_down
WBPaper00041002:HF_11d_0.2mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041609:hpl-1_hpl-2_upregulated
WBPaper00041906:I-3690_vs_OP50_10d
WBPaper00041906:I-4317_vs_OP50_10d
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00045437:Toxic-Se_upregulated
WBPaper00045673:colistin_downregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_downregulated
Interaction (36)
Map_infoPositivePositive_cloneF08D12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII-11.1465
MethodGene