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WormBase Tree Display for Gene: WBGene00016970

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Name Class

WBGene00016970SMapS_parentSequenceC56E6
IdentityVersion1
NameSequence_nameC56E6.2
Molecular_nameC56E6.2
C56E6.2.1
CE30372
Other_nameC56E6.fCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_C56E6.2Accession_evidenceNDBBX284602
Public_nameC56E6.2
DB_infoDatabaseAceViewgene2G815
WormQTLgeneWBGene00016970
WormFluxgeneWBGene00016970
NDBlocus_tagCELE_C56E6.2
PanthergeneCAEEL|WormBase=WBGene00016970|UniProtKB=Q18898
familyPTHR24073
NCBIgene174077
RefSeqproteinNM_062917.8
TREEFAMTREEFAM_IDTF352282
TrEMBLUniProtAccQ18898
UniProt_GCRPUniProtAccQ18898
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:58WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (19)
StrainWBStrain00031942
RNASeq_FPKM (74)
GO_annotation00062736
00062737
00062738
00062739
00062740
00122470
00122471
Ortholog (32)
Paralog (32)
Structured_descriptionAutomated_descriptionPredicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be located in endomembrane system.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC56E6.2
Corresponding_transcriptC56E6.2.1
Other_sequence (18)
Associated_feature (12)
Experimental_infoRNAi_resultWBRNAi00030204Inferred_automaticallyRNAi_primary
WBRNAi00107679Inferred_automaticallyRNAi_primary
WBRNAi00107680Inferred_automaticallyRNAi_primary
WBRNAi00001695Inferred_automaticallyRNAi_primary
WBRNAi00043277Inferred_automaticallyRNAi_primary
Expr_patternExpr1012427
Expr1037283
Expr1147255
Expr2001978
Expr2020202
Drives_constructWBCnstr00027668
Construct_productWBCnstr00027668
Microarray_results (21)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:hypodermis_embryo_enriched
WBPaper00037950:hypodermis_embryo_SelectivelyEnriched
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_embryo_enriched
WBPaper00037950:intestine_embryo_SelectivelyEnriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent
WBPaper00044030:nhr-8(hd117)_downregulated
WBPaper00044037:eat-2_downregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Oogenic
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00045774:clk-1_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
WBPaper00048690:hermaphrodite-Z1-Z4_enriched
WBPaper00048690:male-Z1-Z4_enriched
WBPaper00048971:daf-16(mgDf50)_downregulated_L1
WBPaper00048988:neuron_expressed
WBPaper00049942:HeatShock_upregulated_hsf-1(+)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050193:cec-4(ok3124)_downregulated_L1
WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00050990:seam_expressed
WBPaper00051352:Long-Term-Association-Memory_upregulated
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053321:embryo-to-L1_downregulated_WT_SMARTseq
WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00055049:S.gordonii_upregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055827:pfd-6(gk493446)_upregulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056167:Cry5B_upregulated
WBPaper00056167:ifo-1(kc2)_upregulated
WBPaper00056275:P.aeruginosa_downregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057154:HeatShock_upregulated_mRNA
WBPaper00057288:Cold_downregulated_transcript
WBPaper00059117:B.subtilis_downregulated
WBPaper00059378:lmn-1(Y59C)_upregulated
WBPaper00059471:EGL-43_interacting
WBPaper00059739:hira-1(gk835598)_downregulated_L1
WBPaper00059895:wounding_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061340:DB
WBPaper00061340:DD
WBPaper00061340:Excretory_cell_parent
WBPaper00061527:T24C12.3-C01G10.9
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061699:daf-18(ok480)_downregulated
WBPaper00062118:neural-HSF-1_downregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062520:qui-1(db104)_downregulated
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064315:mes-3(bn199)_upregulated_PGCs
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00064632:daf-2(e1370)_upregulated_intestine
WBPaper00064716:paraquat_downregulated
WBPaper00064727:daf-2(e1370)_upregulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065225:nhr-42(tm1375)_downregulated_S.aureus-infected
WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
WBPaper00065835:Day5_vs_Day1_upregulated
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065984:pals-17(syb3980)_downregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:Doxorubicin_downregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00032062:age_regulated_genes
WBPaper00034739:N2lessDR1350
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00035588:alg-1(-)_upregulated
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_D
WBPaper00037695:WC_5-day
WBPaper00038172:tax-6null_down_regulated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00040963:TA100_down
WBPaper00040963:TA200_down
WBPaper00040963:TA300_down
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00040985:AIN-2_L4_intestine
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00042258:DA1877_downregulated_GravidAdult
WBPaper00044535:male_downregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00049311:Ag-MNP_regulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053827:pyoverdine_upregulated
WBPaper00055899:2,4-Dinitroanisole_regulated
WBPaper00055899:nitroguanidine_regulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
InteractionWBInteraction000425196
WBInteraction000428989
Map_infoPositivePositive_cloneC56E6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII-0.191682
ReferenceWBPaper00027296
WBPaper00038491
WBPaper00055090
MethodGene