WormBase Tree Display for Gene: WBGene00016649

WBGene00016649 SMap: S_parent: Sequence: C44C8
  Identity: Version: 3
    Name: CGC_name: fbxc-1 Person_evidence: WBPerson655
      Sequence_name: C44C8.4
      Molecular_name: C44C8.4
        C44C8.4.1
        CE40752
      Other_name: CELE_C44C8.4 Accession_evidence: NDB BX284604
      Public_name: fbxc-1
    DB_info: Database: AceView gene 4B645
        WormFlux gene WBGene00016649
        NDB locus_tag CELE_C44C8.4
        NCBI gene 183450
        RefSeq protein NM_067606.4
        TREEFAM TREEFAM_ID TF322489
        TrEMBL UniProtAcc G5EGJ4
        UniProt_GCRP UniProtAcc G5EGJ4
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 28 Feb 2007 15:46:35 WBPerson1867 Event: Split_into: WBGene00045301
        3 17 Jun 2008 14:44:53 WBPerson2970 Name_change: CGC_name: fbxc-1
      Split_into: WBGene00045301
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxc
    Allele (18)
    RNASeq_FPKM (74)
    Ortholog (21)
    Paralog (36)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in intestine and neurons based on RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on RNA-seq and microarray studies. Is affected by thirteen chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF3557 and Domain of unknown function (DUF3557). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C44C8.4
    Corresponding_transcript: C44C8.4.1
    Associated_feature: WBsf227891
  Experimental_info: RNAi_result: WBRNAi00011942 Inferred_automatically: RNAi_primary
      WBRNAi00042469 Inferred_automatically: RNAi_primary
      WBRNAi00016035 Inferred_automatically: RNAi_primary
      WBRNAi00011943 Inferred_automatically: RNAi_primary
      WBRNAi00042472 Inferred_automatically: RNAi_primary
      WBRNAi00042474 Inferred_automatically: RNAi_primary
      WBRNAi00042473 Inferred_automatically: RNAi_primary
      WBRNAi00011945 Inferred_automatically: RNAi_primary
      WBRNAi00011944 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1146462
    Drives_construct: WBCnstr00027912
    Construct_product: WBCnstr00027912
    Microarray_results (22)
    Expression_cluster: WBPaper00044246:pgrn-1_ced-3_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00049495:starvation-refeeding_regulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055482:Tunicamycin_downregulated
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056167:Cry5B_downregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059604:fluvastatin_downregulated_dlk-1(km12)
      WBPaper00059604:fluvastatin_downregulated_N2
      WBPaper00060084:cco-1(RNAi)_upregulated_lin-40(yth27)
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00061527:C10C5.2-Y58A7A.3
      WBPaper00062325:etr-1(lq61)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064769:him-17(me24)_upregulated
      WBPaper00065086:N2_N.ironsii_regulated
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_3
      WBPaper00025099:MA_specific
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030985:Photorhabdus_luminescens_upregulated
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_depleted
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035227:heat_shock_regulated
      WBPaper00036286:Pattern_I
      WBPaper00036383:ash-2_Day8_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040821:Au-NP_regulated
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041002:HQ_3d_0.2mM_Up
      WBPaper00041002:HQ_3d_2.0mM_Up
      WBPaper00041211:RPW-24_Up
      WBPaper00041370:spg-7(RNAi)_upregulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00050515:nipi-3(fr4)_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00055899:nitroguanidine_regulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:Cluster_A
      [cgc6390]:herm_soma-enriched
    Interaction (125)
  Map_info: Map: IV Position: -23.1715
    Positive: Positive_clone: C44C8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene