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WormBase Tree Display for Gene: WBGene00016647

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Name Class

WBGene00016647SMapS_parentSequenceC44C8
IdentityVersion3
NameCGC_namefbxc-4Person_evidenceWBPerson655
Sequence_nameC44C8.2
Molecular_nameC44C8.2
C44C8.2.1
CE40754
Other_nameCELE_C44C8.2Accession_evidenceNDBBX284604
Public_namefbxc-4
DB_infoDatabaseAceViewgene4B653
WormQTLgeneWBGene00016647
WormFluxgeneWBGene00016647
NDBlocus_tagCELE_C44C8.2
PanthergeneCAEEL|WormBase=WBGene00016647|UniProtKB=G5EG90
familyPTHR31379
NCBIgene183448
RefSeqproteinNM_067608.4
TREEFAMTREEFAM_IDTF322489
TrEMBLUniProtAccG5EG90
UniProt_GCRPUniProtAccG5EG90
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
228 Feb 2007 15:44:22WBPerson1867EventSplit_intoWBGene00045299
317 Jun 2008 14:44:53WBPerson2970Name_changeCGC_namefbxc-4
Split_intoWBGene00045299
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxc
AlleleWBVar02123914
WBVar01499166
WBVar02123759
WBVar02121758
WBVar02121022
WBVar02122130
WBVar01499954
WBVar01499955
WBVar02124354
WBVar02120491
WBVar02123628
WBVar02121426
WBVar02121985
WBVar02124193
WBVar02124010
WBVar02123468
WBVar01499633
WBVar02122384
WBVar02122575
WBVar02124786
WBVar01499498
WBVar01499499
RNASeq_FPKM (74)
Ortholog (11)
Paralog (50)
Structured_descriptionAutomated_descriptionEnriched in intestine and neurons based on RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and pie-1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including D-glucopyranose; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF3557 and Domain of unknown function (DUF3557).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC44C8.2
Corresponding_CDS_historyC44C8.2:wp172
Corresponding_transcriptC44C8.2.1
Associated_featureWBsf227895
Experimental_infoRNAi_resultWBRNAi00011942Inferred_automaticallyRNAi_primary
WBRNAi00042469Inferred_automaticallyRNAi_primary
WBRNAi00016035Inferred_automaticallyRNAi_primary
WBRNAi00011943Inferred_automaticallyRNAi_primary
WBRNAi00042472Inferred_automaticallyRNAi_primary
WBRNAi00042474Inferred_automaticallyRNAi_primary
WBRNAi00042473Inferred_automaticallyRNAi_primary
WBRNAi00011945Inferred_automaticallyRNAi_primary
WBRNAi00011944Inferred_automaticallyRNAi_primary
Expr_patternExpr1146460
Drives_constructWBCnstr00027914
Construct_productWBCnstr00027914
Microarray_results180035_s_at
Expression_clusterWBPaper00032031:DConiospora_upregulated_OligoArray_24h
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00044246:pgrn-1_ced-3_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00048952:glucose_repressed
WBPaper00048971:daf-16(mgDf50)_downregulated_L1
WBPaper00048988:neuron_expressed
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00054872:egl-9(sa307)_downregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00057068:Cadmium_upregulated
WBPaper00059604:fluvastatin_downregulated_dlk-1(km12)
WBPaper00059604:fluvastatin_downregulated_N2
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061358:ferulic-acid_upregulated
WBPaper00061478:pie-1(ne4433)_upregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00062193:daf-16(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064769:him-17(me24)_upregulated
WBPaper00065086:JU1400_N.ironsii_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065086:N2_N.ironsii_regulated
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:hlh_1_enriched
WBPaper00031003:total_muscle_depleted
WBPaper00034757:up_by_oxidative_stress
WBPaper00035227:heat_shock_regulated
WBPaper00036383:ash-2_Day8_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040821:Au-NP_regulated
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HQ_3d_0.2mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041211:RPW-24_Up
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00050515:nipi-3(fr4)_upregulated
WBPaper00053236:Starvation_regulated_GR1307
Interaction (116)
Map_infoMapIVPosition-23.1435
PositivePositive_cloneC44C8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene