WormBase Tree Display for Gene: WBGene00016583
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| WBGene00016583 | SMap | S_parent | Sequence | C42C1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tag-335 | |||||||
| Sequence_name | C42C1.5 | ||||||||
| Molecular_name | C42C1.5 | ||||||||
| C42C1.5.1 | |||||||||
| CE40443 | |||||||||
| C42C1.5.2 | |||||||||
| Other_name | CELE_C42C1.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | tag-335 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 21 Jun 2005 09:45:25 | WBPerson2970 | Name_change | CGC_name | tag-355 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tag | ||||||||
| Allele (48) | |||||||||
| Strain | WBStrain00002762 | ||||||||
| WBStrain00036203 | |||||||||
| WBStrain00036252 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP4612 | ||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00021628 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004090 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008428 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable mannose-1-phosphate guanylyltransferase (GTP) activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2T; congenital muscular dystrophy-dystroglycanopathy A14; and muscular dystrophy-dystroglycanopathy type B14. Is an ortholog of human GMPPB (GDP-mannose pyrophosphorylase B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112377 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22932) | ||||
| DOID:0112374 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22932) | ||||||
| DOID:0110294 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22932) | ||||||
| DOID:0111233 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22932) | ||||||
| Molecular_info | Corresponding_CDS | C42C1.5 | |||||||
| Corresponding_CDS_history | C42C1.5:wp165 | ||||||||
| Corresponding_transcript | C42C1.5.1 | ||||||||
| C42C1.5.2 | |||||||||
| Other_sequence (57) | |||||||||
| Associated_feature | WBsf652286 | ||||||||
| WBsf652287 | |||||||||
| WBsf655534 | |||||||||
| WBsf655535 | |||||||||
| WBsf230994 | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Chronogram481 | ||||||||
| Expr5487 | |||||||||
| Expr1011991 | |||||||||
| Expr1037115 | |||||||||
| Expr1146332 | |||||||||
| Expr2017275 | |||||||||
| Expr2035410 | |||||||||
| Drives_construct | WBCnstr00003290 | ||||||||
| WBCnstr00027963 | |||||||||
| Construct_product | WBCnstr00027963 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction (177) | |||||||||
| Map_info | Map | IV | Position | 5.83176 | Error | 0.001762 | |||
| Positive | Positive_clone | C42C1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5302 | |||||||
| 4583 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
