WormBase Tree Display for Gene: WBGene00016583
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WBGene00016583 | SMap | S_parent | Sequence | C42C1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | tag-335 | |||||||
Sequence_name | C42C1.5 | ||||||||
Molecular_name | C42C1.5 | ||||||||
C42C1.5.1 | |||||||||
CE40443 | |||||||||
C42C1.5.2 | |||||||||
Other_name | CELE_C42C1.5 | Accession_evidence | NDB | BX284604 | |||||
Public_name | tag-335 | ||||||||
DB_info | Database (13) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 21 Jun 2005 09:45:25 | WBPerson2970 | Name_change | CGC_name | tag-355 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | tag | ||||||||
Allele (48) | |||||||||
Strain | WBStrain00002762 | ||||||||
WBStrain00036203 | |||||||||
WBStrain00036252 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Contained_in_operon | CEOP4612 | ||||||||
Ortholog (42) | |||||||||
Paralog | WBGene00021628 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00004090 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00008428 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable mannose-1-phosphate guanylyltransferase (GTP) activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2T; congenital muscular dystrophy-dystroglycanopathy A14; and muscular dystrophy-dystroglycanopathy type B14. Is an ortholog of human GMPPB (GDP-mannose pyrophosphorylase B). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0112377 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22932) | ||||
DOID:0112374 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22932) | ||||||
DOID:0110294 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22932) | ||||||
DOID:0111233 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22932) | ||||||
Molecular_info | Corresponding_CDS | C42C1.5 | |||||||
Corresponding_CDS_history | C42C1.5:wp165 | ||||||||
Corresponding_transcript | C42C1.5.1 | ||||||||
C42C1.5.2 | |||||||||
Other_sequence | Tcol_isotig02516 | ||||||||
OVC00009_1 | |||||||||
BE721020.1 | |||||||||
Tcir_isotig07568 | |||||||||
Acan_isotig10746 | |||||||||
Tcol_isotig02512 | |||||||||
EX551921.1 | |||||||||
CRC12431_1 | |||||||||
GW410753.1 | |||||||||
AA294732.1 | |||||||||
TSC09922_1 | |||||||||
FC552667.1 | |||||||||
FK805611.1 | |||||||||
ES562107.1 | |||||||||
Tcol_isotig02511 | |||||||||
PSC02844_1 | |||||||||
Name_isotig05272 | |||||||||
CBC09210_1 | |||||||||
HGC05036_1 | |||||||||
EX563237.1 | |||||||||
EY467772.1 | |||||||||
Tcol_isotig02510 | |||||||||
Acan_isotig08758 | |||||||||
EX563855.1 | |||||||||
Tcol_isotig02514 | |||||||||
FC552132.1 | |||||||||
CJC07533_1 | |||||||||
TM02819 | |||||||||
FC540208.1 | |||||||||
AI313784.1 | |||||||||
HG08052 | |||||||||
ES743246.1 | |||||||||
JI171086.1 | |||||||||
ACC20110_1 | |||||||||
Tcol_isotig17274 | |||||||||
FC542914.1 | |||||||||
EX551492.1 | |||||||||
Hbac_isotig01552 | |||||||||
FC542867.1 | |||||||||
EY467659.1 | |||||||||
FG580207.1 | |||||||||
Oden_isotig17644 | |||||||||
Tcol_isotig02515 | |||||||||
EX553320.1 | |||||||||
EY466129.1 | |||||||||
Dviv_isotig23121 | |||||||||
FC540343.1 | |||||||||
AA736344.1 | |||||||||
EX007734.1 | |||||||||
ES741568.1 | |||||||||
HBC02744_1 | |||||||||
ACC08188_1 | |||||||||
JI482477.1 | |||||||||
EX010698.1 | |||||||||
BXC00151_1 | |||||||||
Tcol_isotig23824 | |||||||||
EX564523.1 | |||||||||
Associated_feature | WBsf652286 | ||||||||
WBsf652287 | |||||||||
WBsf655534 | |||||||||
WBsf655535 | |||||||||
WBsf230994 | |||||||||
Experimental_info | RNAi_result (19) | ||||||||
Expr_pattern | Chronogram481 | ||||||||
Expr5487 | |||||||||
Expr1011991 | |||||||||
Expr1037115 | |||||||||
Expr1146332 | |||||||||
Expr2017275 | |||||||||
Expr2035410 | |||||||||
Drives_construct | WBCnstr00003290 | ||||||||
WBCnstr00027963 | |||||||||
Construct_product | WBCnstr00027963 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (102) | |||||||||
Interaction (177) | |||||||||
Map_info | Map | IV | Position | 5.83176 | Error | 0.001762 | |||
Positive | Positive_clone | C42C1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5302 | |||||||
4583 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00048493 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |