WormBase Tree Display for Gene: WBGene00016583
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WBGene00016583 | SMap | S_parent | Sequence | C42C1 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | tag-335 | |||||
Sequence_name | C42C1.5 | ||||||
Molecular_name | C42C1.5 | ||||||
C42C1.5.1 | |||||||
CE40443 | |||||||
C42C1.5.2 | |||||||
Other_name | CELE_C42C1.5 | Accession_evidence | NDB | BX284604 | |||
Public_name | tag-335 | ||||||
DB_info | Database (13) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | tag | ||||||
Allele (48) | |||||||
Strain | WBStrain00002762 | ||||||
WBStrain00036203 | |||||||
WBStrain00036252 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (13) | |||||||
Contained_in_operon | CEOP4612 | ||||||
Ortholog (42) | |||||||
Paralog | WBGene00021628 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00004090 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00008428 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Automated_description | Predicted to enable mannose-1-phosphate guanylyltransferase (GTP) activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2T; congenital muscular dystrophy-dystroglycanopathy A14; and muscular dystrophy-dystroglycanopathy type B14. Is an ortholog of human GMPPB (GDP-mannose pyrophosphorylase B). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0112377 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22932) | ||
DOID:0112374 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22932) | ||||
DOID:0110294 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22932) | ||||
DOID:0111233 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22932) | ||||
Molecular_info | Corresponding_CDS | C42C1.5 | |||||
Corresponding_CDS_history | C42C1.5:wp165 | ||||||
Corresponding_transcript | C42C1.5.1 | ||||||
C42C1.5.2 | |||||||
Other_sequence (57) | |||||||
Associated_feature | WBsf652286 | ||||||
WBsf652287 | |||||||
WBsf655534 | |||||||
WBsf655535 | |||||||
WBsf230994 | |||||||
Experimental_info | RNAi_result (19) | ||||||
Expr_pattern | Chronogram481 | ||||||
Expr5487 | |||||||
Expr1011991 | |||||||
Expr1037115 | |||||||
Expr1146332 | |||||||
Expr2017275 | |||||||
Expr2035410 | |||||||
Drives_construct | WBCnstr00003290 | ||||||
WBCnstr00027963 | |||||||
Construct_product | WBCnstr00027963 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (102) | |||||||
Interaction (177) | |||||||
Map_info | Map | IV | Position | 5.83176 | Error | 0.001762 | |
Positive | Positive_clone | C42C1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5302 | |||||
4583 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00038491 | ||||||
WBPaper00048493 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |