WormBase Tree Display for Gene: WBGene00016196
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| WBGene00016196 | SMap | S_parent | Sequence | C28H8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C28H8.5 | |||||||
| Molecular_name | C28H8.5a | ||||||||
| C28H8.5a.1 | |||||||||
| CE01827 | |||||||||
| C28H8.5b | |||||||||
| CE39681 | |||||||||
| C28H8.5b.1 | |||||||||
| Other_name | CELE_C28H8.5 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | C28H8.5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (27) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00003104 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008260 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00008993 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012143 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012917 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00015794 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00044557 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in AFD; hypodermis; and touch receptor neurons based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and dpy-10 based on microarray; tiling array; and RNA-seq studies. Is affected by fourteen chemicals including Ethanol; 1-methylnicotinamide; and Tunicamycin based on RNA-seq and microarray studies. Human THAP4 enables several functions, including heme binding activity; identical protein binding activity; and peroxynitrite isomerase activity. Is predicted to encode a protein with the following domains: ShK domain-like; Calycin; ShKT domain; THAP4-like, heme-binding beta-barrel domain; and Nitrobindin family. Is an ortholog of human THAP4 (THAP domain containing 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C28H8.5a | |||||||
| C28H8.5b | |||||||||
| Corresponding_CDS_history | C28H8.5:wp154 | ||||||||
| Corresponding_transcript | C28H8.5a.1 | ||||||||
| C28H8.5b.1 | |||||||||
| Other_sequence | ES743354.1 | ||||||||
| BMC05326_1 | |||||||||
| DI00340 | |||||||||
| AA618913.1 | |||||||||
| CJC05972_1 | |||||||||
| MHC02145_1 | |||||||||
| Hbac_isotig07219 | |||||||||
| SR00137 | |||||||||
| MH00812 | |||||||||
| DIC00524_1 | |||||||||
| Associated_feature | WBsf659005 | ||||||||
| WBsf225020 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011314 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00041431 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029304 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005542 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1029181 | ||||||||
| Expr1145461 | |||||||||
| Expr2001207 | |||||||||
| Expr2019429 | |||||||||
| Drives_construct | WBCnstr00028254 | ||||||||
| Construct_product | WBCnstr00028254 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (172) | |||||||||
| Interaction (84) | |||||||||
| Map_info | Positive | Positive_clone | C28H8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -1.43682 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
