WormBase Tree Display for Gene: WBGene00008260
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| WBGene00008260 | SMap | S_parent | Sequence | C52G5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C52G5.2 | |||||||
| Molecular_name | C52G5.2 | ||||||||
| C52G5.2.1 | |||||||||
| CE03086 | |||||||||
| Other_name | CELE_C52G5.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | C52G5.2 | ||||||||
| DB_info | Database | AceView | gene | XN463 | |||||
| WormQTL | gene | WBGene00008260 | |||||||
| WormFlux | gene | WBGene00008260 | |||||||
| NDB | locus_tag | CELE_C52G5.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008260|UniProtKB=Q18793 | |||||||
| family | PTHR15854 | ||||||||
| NCBI | gene | 181420 | |||||||
| RefSeq | protein | NM_077738.9 | |||||||
| TrEMBL | UniProtAcc | Q18793 | |||||||
| UniProt_GCRP | UniProtAcc | Q18793 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (35) | |||||||||
| Strain | WBStrain00035280 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00003104 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00016196 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015794 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012143 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00008993 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00044557 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in several structures, including PLM; germline precursor cell; hypodermis; interfacial epithelial cell; and somatic gonad precursor based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and proteomic studies. Is affected by nineteen chemicals including aldicarb; D-glucopyranose; and D-glucose based on microarray; RNA-seq; and proteomic studies. Human THAP4 enables several functions, including heme binding activity; identical protein binding activity; and peroxynitrite isomerase activity. Is predicted to encode a protein with the following domains: THAP4-like, heme-binding beta-barrel domain; Calycin; and Nitrobindin family. Is an ortholog of human THAP4 (THAP domain containing 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C52G5.2 | |||||||
| Corresponding_transcript | C52G5.2.1 | ||||||||
| Other_sequence (50) | |||||||||
| Associated_feature (15) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00002344 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00012327 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043053 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030092 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092963 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram298 | ||||||||
| Expr7769 | |||||||||
| Expr1020644 | |||||||||
| Expr1033587 | |||||||||
| Expr1147014 | |||||||||
| Expr2001870 | |||||||||
| Expr2020096 | |||||||||
| Drives_construct | WBCnstr00001211 | ||||||||
| WBCnstr00012914 | |||||||||
| WBCnstr00033106 | |||||||||
| Construct_product | WBCnstr00033106 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (215) | |||||||||
| Interaction (142) | |||||||||
| Map_info | Positive | Positive_clone | C52G5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | 8.51436 | |||||||
| Reference | WBPaper00030657 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
