WormBase Tree Display for Gene: WBGene00015471
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WBGene00015471 | SMap | S_parent | Sequence | C05D9 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | lmp-2 | Person_evidence | WBPerson298 | |||
Sequence_name | C05D9.2 | ||||||
Molecular_name | C05D9.2 | ||||||
C05D9.2.1 | |||||||
CE07928 | |||||||
C05D9.2.2 | |||||||
C05D9.2.3 | |||||||
Other_name | CELE_C05D9.2 | Accession_evidence | NDB | BX284606 | |||
Public_name | lmp-2 | ||||||
DB_info | Database | AceView | gene | XB745 | |||
WormQTL | gene | WBGene00015471 | |||||
WormFlux | gene | WBGene00015471 | |||||
NDB | locus_tag | CELE_C05D9.2 | |||||
Panther | gene | CAEEL|WormBase=WBGene00015471|UniProtKB=Q9GYK0 | |||||
family | PTHR11506 | ||||||
NCBI | gene | 180467 | |||||
RefSeq | protein | NM_001392725.1 | |||||
TREEFAM | TREEFAM_ID | TF316339 | |||||
TrEMBL | UniProtAcc | Q9GYK0 | |||||
UniProt_GCRP | UniProtAcc | Q9GYK0 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lmp | ||||||
Allele (33) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00092775 | ||||||
00092776 | |||||||
00092777 | |||||||
00092778 | |||||||
00092779 | |||||||
00092780 | |||||||
00092781 | |||||||
00121372 | |||||||
Ortholog (35) | |||||||
Paralog | WBGene00003053 | Caenorhabditis elegans | From_analysis | Panther | |||
Structured_description | Concise_description | lmp-2 encodes a transmembrane protein that is one of two C. elegans LAMP (lysosomal associated membrane glycoprotein) homologs. | Paper_evidence | WBPaper00030788 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 12 Jun 2008 00:00:00 | ||||||
Automated_description | Predicted to be involved in establishment of protein localization to organelle. Predicted to be located in late endosome membrane; lysosomal membrane; and plasma membrane. Is an ortholog of human LAMP1 (lysosomal associated membrane protein 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C05D9.2 | |||||
Corresponding_transcript | C05D9.2.1 | ||||||
C05D9.2.2 | |||||||
C05D9.2.3 | |||||||
Other_sequence | CBC17005_1 | ||||||
CJC09270_1 | |||||||
CBC07432_1 | |||||||
Associated_feature | WBsf647819 | ||||||
WBsf235314 | |||||||
Experimental_info | RNAi_result | WBRNAi00000249 | Inferred_automatically | RNAi_primary | |||
WBRNAi00028504 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00010212 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00039761 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076085 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr13184 | ||||||
Expr1021936 | |||||||
Expr1143848 | |||||||
Expr2013236 | |||||||
Expr2031467 | |||||||
Drives_construct | WBCnstr00028820 | ||||||
Construct_product | WBCnstr00028820 | ||||||
Microarray_results (23) | |||||||
Expression_cluster (169) | |||||||
Map_info | Map | X | Position | -18.5049 | |||
Positive | Positive_clone | C05D9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00030788 | ||||||
WBPaper00030896 | |||||||
WBPaper00038491 | |||||||
WBPaper00050406 | |||||||
WBPaper00050648 | |||||||
WBPaper00055090 | |||||||
WBPaper00056693 | |||||||
WBPaper00059755 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |