WormBase Tree Display for Gene: WBGene00015035
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| WBGene00015035 | SMap | S_parent | Sequence | B0212 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | otpl-1 | |||||||
| Sequence_name | B0212.1 | ||||||||
| Molecular_name | B0212.1a | ||||||||
| B0212.1a.1 | |||||||||
| CE44425 | |||||||||
| B0212.1b | |||||||||
| CE49039 | |||||||||
| B0212.1c | |||||||||
| CE48561 | |||||||||
| B0212.1b.1 | |||||||||
| B0212.1c.1 | |||||||||
| Other_name | CELE_B0212.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | otpl-1 | ||||||||
| DB_info | Database | AceView | gene | 4E341 | |||||
| WormQTL | gene | WBGene00015035 | |||||||
| WormFlux | gene | WBGene00015035 | |||||||
| NDB | locus_tag | CELE_B0212.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015035|UniProtKB=U4PEQ1 | |||||||
| family | PTHR21522 | ||||||||
| NCBI | gene | 181841 | |||||||
| RefSeq | protein | NM_001392283.1 | |||||||
| NM_001307511.1 | |||||||||
| NM_067973.4 | |||||||||
| TrEMBL | UniProtAcc | U4PBH5 | |||||||
| U4PEQ1 | |||||||||
| O45067 | |||||||||
| UniProt_GCRP | UniProtAcc | U4PEQ1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Apr 2008 11:28:34 | WBPerson2970 | Name_change | CGC_name | otpl-1 | ||||
| 3 | 27 Sep 2013 10:35:05 | WBPerson4025 | Event | Acquires_merge | WBGene00044111 | ||||
| Acquires_merge | WBGene00044111 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | otpl | ||||||||
| Allele (180) | |||||||||
| Strain | WBStrain00050964 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00010403 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017034 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00018478 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018479 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018480 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017449 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018477 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | otpl-1 encodes an ortholog of otopetrins such as human OTOP1 (OMIM:607806), OTOP2 (OMIM:607827), and OTOP3 (OMIM:607828), along with other homologs in fish and insects (such as crustacean OTOPLb); otopetrins are predicted to have 12 transmembrane helices; by homology with OTOP1 and OTOPLb, OTPL-1 might regulate intracellular calcium fluxes during extracellular stimuli, promote extracellular calcium carbonate biomineralization, or both; OTPL-1's paralogs include OTPL-2 through OTPL-8. | Paper_evidence | WBPaper00031620 | |||||
| WBPaper00031621 | |||||||||
| WBPaper00031622 | |||||||||
| WBPaper00031623 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 04 Apr 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable proton channel activity. Predicted to be involved in proton transmembrane transport. Predicted to be located in plasma membrane. Is an ortholog of human OTOP1 (otopetrin 1); OTOP2 (otopetrin 2); and OTOP3 (otopetrin 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0212.1a | |||||||
| B0212.1b | |||||||||
| B0212.1c | |||||||||
| Corresponding_CDS_history | B0212.1:wp210 | ||||||||
| Corresponding_transcript | B0212.1a.1 | ||||||||
| B0212.1b.1 | |||||||||
| B0212.1c.1 | |||||||||
| Other_sequence | HGC05023_1 | ||||||||
| Tcol_isotig13542 | |||||||||
| GPC01423_1 | |||||||||
| Tcir_isotig14099 | |||||||||
| GP02880 | |||||||||
| Acan_isotig15944 | |||||||||
| HG09223 | |||||||||
| Associated_feature | WBsf645877 | ||||||||
| WBsf659784 | |||||||||
| WBsf995984 | |||||||||
| WBsf995985 | |||||||||
| WBsf995986 | |||||||||
| WBsf1017084 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00009576 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038723 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010869 | ||||||||
| Expr1017170 | |||||||||
| Expr1142933 | |||||||||
| Expr1142938 | |||||||||
| Expr2014657 | |||||||||
| Expr2032890 | |||||||||
| Microarray_results (34) | |||||||||
| Expression_cluster (123) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | IV | Position | -3.14057 | Error | 0.003476 | |||
| Positive | Positive_clone | B0212 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031620 | ||||||||
| WBPaper00031622 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056048 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
