WormBase Tree Display for Gene: WBGene00015008

WBGene00015008 SMap: S_parent: Sequence: B0041
  Identity: Version: 2
    Name: CGC_name: lmd-2 Person_evidence: WBPerson8574
      Sequence_name: B0041.3
      Molecular_name: B0041.3
        B0041.3.1
        CE51424
      Other_name: CELE_B0041.3 Accession_evidence: NDB BX284601
      Public_name: lmd-2
    DB_info: Database (10)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 25 Jan 2013 14:30:54 WBPerson2970 Name_change: CGC_name: lmd-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lmd
    Allele (21)
    RNASeq_FPKM (74)
    Ortholog (32)
    Paralog: WBGene00009665 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in body wall musculature; intestine; neurons; and retrovesicular ganglion based on microarray and RNA-seq studies. Is affected by several genes including daf-12; sir-2.1; and clk-1 based on microarray; tiling array; and RNA-seq studies. Is affected by seven chemicals including Doxycycline; Ketamine; and Quercetin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: LysM domain superfamily; LysM domain; and LysM and putative peptidoglycan-binding domain-containing protein 1-4. Is an ortholog of human LYSMD1 (LysM domain containing 1) and LYSMD2 (LysM domain containing 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0041.3
    Corresponding_CDS_history: B0041.3:wp252
    Corresponding_transcript: B0041.3.1
    Other_sequence: MI01003
      CV199347.1
    Associated_feature: WBsf643226
      WBsf983455
      WBsf217555
  Experimental_info: RNAi_result: WBRNAi00023624 Inferred_automatically: RNAi_primary
      WBRNAi00002828 Inferred_automatically: RNAi_primary
      WBRNAi00023012 Inferred_automatically: RNAi_primary
      WBRNAi00027965 Inferred_automatically: RNAi_primary
      WBRNAi00038687 Inferred_automatically: RNAi_primary
      WBRNAi00023913 Inferred_automatically: RNAi_primary
      WBRNAi00090772 Inferred_automatically: RNAi_primary
      WBRNAi00023113 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024960
      Expr1036415
      Expr1142894
      Expr2013231
      Expr2031462
    Drives_construct: WBCnstr00029163
    Construct_product: WBCnstr00029163
    Microarray_results (18)
    Expression_cluster: WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00040990:PA14_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00045521:Oogenic
      WBPaper00045861:set-2(ok952)_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:set-2(bn129)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059763:neuron_expressed
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00061527:skr-16-F37B4.10
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00062520:qui-1(db104)_upregulated
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064788:ketamine_upregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Enriched_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030839:Embryo_A_Class
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_A_Class
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00035227:heat_shock_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_F
      WBPaper00040963:Q200_down
      WBPaper00040963:TA100_down
      WBPaper00040963:TA200_down
      WBPaper00040963:TA300_down
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00040985:AIN-2_L4_intestine
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041906:I-3690_vs_OP50_3d
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042234:xpa-1_upregulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(122_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:mixed_oogenesis-somatic
    Interaction: WBInteraction000194521
      WBInteraction000237241
      WBInteraction000248467
      WBInteraction000249449
      WBInteraction000358296
      WBInteraction000394851
      WBInteraction000417213
      WBInteraction000449092
      WBInteraction000474744
  Map_info: Map: I Position: -1.03468
    Positive: Positive_clone: B0041 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031295
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene