WormBase Tree Display for Gene: WBGene00014222

WBGene00014222 SMap: S_parent: Sequence: ZK1098
  Identity: Version: 2
    Name: CGC_name: trpp-3 Person_evidence: WBPerson3188
      Sequence_name: ZK1098.5
      Molecular_name: ZK1098.5
        ZK1098.5.1
        CE00368
      Other_name: CELE_ZK1098.5 Accession_evidence: NDB BX284603
      Public_name: trpp-3
    DB_info: Database: AceView gene 3K615
        WormQTL gene WBGene00014222
        WormFlux gene WBGene00014222
        NDB locus_tag CELE_ZK1098.5
        Panther gene CAEEL|WormBase=WBGene00014222|UniProtKB=P34605
          family PTHR13048
        NCBI gene 176344
        RefSeq protein NM_066699.7
        SwissProt UniProtAcc P34605
        TREEFAM TREEFAM_ID TF300091
        UniProt_GCRP UniProtAcc P34605
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 08 Aug 2013 16:41:57 WBPerson2970 Name_change: CGC_name: trpp-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: trpp
    Allele (21)
    Strain: WBStrain00051448
    RNASeq_FPKM (74)
    GO_annotation (18)
    Contained_in_operon: CEOP3596
    Ortholog (37)
    Structured_description: Automated_description: Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle and protein secretion. Predicted to be located in cis-Golgi network membrane and cytosol. Predicted to be part of TRAPP complex. Is an ortholog of human TRAPPC3 (trafficking protein particle complex subunit 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK1098.5
    Corresponding_transcript: ZK1098.5.1
    Other_sequence (34)
    Associated_feature: WBsf659416
      WBsf225587
  Experimental_info: RNAi_result: WBRNAi00059113 Inferred_automatically: RNAi_primary
      WBRNAi00059112 Inferred_automatically: RNAi_primary
      WBRNAi00059111 Inferred_automatically: RNAi_primary
      WBRNAi00082858 Inferred_automatically: RNAi_primary
      WBRNAi00085570 Inferred_automatically: RNAi_primary
      WBRNAi00038148 Inferred_automatically: RNAi_primary
      WBRNAi00002785 Inferred_automatically: RNAi_primary
      WBRNAi00002662 Inferred_automatically: RNAi_primary
      WBRNAi00061602 Inferred_automatically: RNAi_primary
      WBRNAi00021807 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024760
      Expr1036375
      Expr1162538
      Expr2017510
      Expr2035649
    Drives_construct: WBCnstr00029214
    Construct_product: WBCnstr00029214
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00033070:Elbe_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049732:blmp-1(tm548)_vs_N2_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061527:F43G9.13-F33D11.12
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_downregulated_Ref
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066038:mip-1(how5)_downregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Enriched_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030839:Embryo_A_Class
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00032165:differentially_expressed_with_age_medoid_5
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_24
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:intrinsic
    Interaction (111)
  Map_info: Map: III Position: 0.577842
    Positive: Positive_clone: ZK1098 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005423
    WBPaper00005747
    WBPaper00027766
    WBPaper00038491
    WBPaper00055090
    WBPaper00060970
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene