WormBase Tree Display for Gene: WBGene00013289
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| WBGene00013289 | SMap | S_parent | Sequence | Y57G11A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | tag-273 | |||||||
| Sequence_name | Y57G11A.1 | ||||||||
| Molecular_name (18) | |||||||||
| Other_name | CELE_Y57G11A.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | tag-273 | ||||||||
| DB_info | Database | AceView | gene | 4P252 | |||||
| WormQTL | gene | WBGene00013289 | |||||||
| WormFlux | gene | WBGene00013289 | |||||||
| NDB | locus_tag | CELE_Y57G11A.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013289|UniProtKB=A0A061AD47 | |||||||
| family | PTHR24206 | ||||||||
| NCBI | gene | 178388 | |||||||
| RefSeq | protein | NM_001028345.6 | |||||||
| NM_001268884.3 | |||||||||
| NM_001028346.5 | |||||||||
| NM_001268883.3 | |||||||||
| NM_001307072.3 | |||||||||
| NM_001307071.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF343928 | |||||||
| TrEMBL | UniProtAcc | A0A061AD47 | |||||||
| H2L2L1 | |||||||||
| O18221 | |||||||||
| A0A061AE99 | |||||||||
| Q86CZ7 | |||||||||
| H2L2L0 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A061AD47 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Apr 2005 11:55:18 | WBPerson2970 | Name_change | CGC_name | tag-273 | ||||
| 3 | 07 May 2008 11:27:23 | WBPerson4025 | Event | Acquires_merge | WBGene00013291 | ||||
| Acquires_merge | WBGene00013291 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tag | ||||||||
| Allele (267) | |||||||||
| Strain | WBStrain00036146 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00000225 | ||||||||
| 00000226 | |||||||||
| 00000227 | |||||||||
| 00000228 | |||||||||
| 00000229 | |||||||||
| Ortholog (54) | |||||||||
| Structured_description | Concise_description | tag-273 encodes a LIM-type zinc finger domain-containing protein with similarity to human LIM domain and actin-binding protein 1 (HGNC:LIMA1); RNAi experiments indicate that TAG-273 is required for normal reproduction; about 3% to 10% of tag-273 transcripts are RNA edited to change A to G resulting in a change to residue 688 from an N to a S. | Paper_evidence | WBPaper00045975 | |||||
| WBPaper00024497 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson4025 | |||||||||
| Date_last_updated | 28 Dec 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly. Predicted to be located in actin cytoskeleton and plasma membrane. Is an ortholog of human LIMA1 (LIM domain and actin binding 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y57G11A.1a | |||||||
| Y57G11A.1b | |||||||||
| Y57G11A.1c | |||||||||
| Y57G11A.1d | |||||||||
| Y57G11A.1e | |||||||||
| Y57G11A.1f | |||||||||
| Corresponding_CDS_history | Y57G11A.1:wp99 | ||||||||
| Y57G11A.1b:wp191 | |||||||||
| Corresponding_transcript | Y57G11A.1a.1 | ||||||||
| Y57G11A.1b.1 | |||||||||
| Y57G11A.1c.1 | |||||||||
| Y57G11A.1d.1 | |||||||||
| Y57G11A.1e.1 | |||||||||
| Y57G11A.1f.1 | |||||||||
| Other_sequence (95) | |||||||||
| Associated_feature | WBsf652372 | ||||||||
| WBsf716799 | |||||||||
| WBsf718239 | |||||||||
| WBsf998586 | |||||||||
| WBsf998587 | |||||||||
| WBsf998588 | |||||||||
| WBsf1018659 | |||||||||
| WBsf231203 | |||||||||
| Transcription_factor | WBTranscriptionFactor000677 | ||||||||
| WBTranscriptionFactor000697 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00021128 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00057670 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057673 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115823 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037586 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002017 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026697 | ||||||||
| Expr1035929 | |||||||||
| Expr1161078 | |||||||||
| Expr2017256 | |||||||||
| Expr2035392 | |||||||||
| Drives_construct | WBCnstr00029711 | ||||||||
| Construct_product | WBCnstr00029711 | ||||||||
| Microarray_results (39) | |||||||||
| Expression_cluster (226) | |||||||||
| Interaction (114) | |||||||||
| Map_info | Map | IV | Position | 12.1804 | Error | 0.002269 | |||
| Positive | Positive_clone | Y57G11A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5181 | |||||||
| 4393 | |||||||||
| 5531 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00031687 | |||||||||
| WBPaper00046360 | |||||||||
| WBPaper00059258 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
