WormBase Tree Display for Gene: WBGene00013289

WBGene00013289 SMap: S_parent: Sequence: Y57G11A
  Identity: Version: 3
    Name: CGC_name: tag-273
      Sequence_name: Y57G11A.1
      Molecular_name (18)
      Other_name: CELE_Y57G11A.1 Accession_evidence: NDB BX284604
      Public_name: tag-273
    DB_info: Database: AceView gene 4P252
        WormQTL gene WBGene00013289
        WormFlux gene WBGene00013289
        NDB locus_tag CELE_Y57G11A.1
        Panther gene CAEEL|WormBase=WBGene00013289|UniProtKB=A0A061AD47
          family PTHR24206
        NCBI gene 178388
        RefSeq protein NM_001028345.6
            NM_001268884.3
            NM_001028346.5
            NM_001268883.3
            NM_001307072.3
            NM_001307071.3
        TREEFAM TREEFAM_ID TF343928
        TrEMBL UniProtAcc A0A061AD47
            H2L2L1
            O18221
            A0A061AE99
            Q86CZ7
            H2L2L0
        UniProt_GCRP UniProtAcc A0A061AD47
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 22 Apr 2005 11:55:18 WBPerson2970 Name_change: CGC_name: tag-273
        3 07 May 2008 11:27:23 WBPerson4025 Event: Acquires_merge: WBGene00013291
      Acquires_merge: WBGene00013291
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tag
    Allele (267)
    Strain: WBStrain00036146
    RNASeq_FPKM (74)
    GO_annotation: 00000225
      00000226
      00000227
      00000228
      00000229
    Ortholog (54)
    Structured_description: Concise_description: tag-273 encodes a LIM-type zinc finger domain-containing protein with similarity to human LIM domain and actin-binding protein 1 (HGNC:LIMA1); RNAi experiments indicate that TAG-273 is required for normal reproduction; about 3% to 10% of tag-273 transcripts are RNA edited to change A to G resulting in a change to residue 688 from an N to a S. Paper_evidence: WBPaper00045975
            WBPaper00024497
          Curator_confirmed: WBPerson1843
            WBPerson4025
          Date_last_updated: 28 Dec 2014 00:00:00
      Automated_description: Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly. Predicted to be located in actin cytoskeleton and plasma membrane. Is an ortholog of human LIMA1 (LIM domain and actin binding 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y57G11A.1a
      Y57G11A.1b
      Y57G11A.1c
      Y57G11A.1d
      Y57G11A.1e
      Y57G11A.1f
    Corresponding_CDS_history: Y57G11A.1:wp99
      Y57G11A.1b:wp191
    Corresponding_transcript: Y57G11A.1a.1
      Y57G11A.1b.1
      Y57G11A.1c.1
      Y57G11A.1d.1
      Y57G11A.1e.1
      Y57G11A.1f.1
    Other_sequence (95)
    Associated_feature: WBsf652372
      WBsf716799
      WBsf718239
      WBsf998586
      WBsf998587
      WBsf998588
      WBsf1018659
      WBsf231203
    Transcription_factor: WBTranscriptionFactor000677
      WBTranscriptionFactor000697
  Experimental_info: RNAi_result: WBRNAi00021128 Inferred_automatically: RNAi_primary
      WBRNAi00057670 Inferred_automatically: RNAi_primary
      WBRNAi00057673 Inferred_automatically: RNAi_primary
      WBRNAi00115823 Inferred_automatically: RNAi_primary
      WBRNAi00037586 Inferred_automatically: RNAi_primary
      WBRNAi00002017 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026697
      Expr1035929
      Expr1161078
      Expr2017256
      Expr2035392
    Drives_construct: WBCnstr00029711
    Construct_product: WBCnstr00029711
    Microarray_results (39)
    Expression_cluster (226)
    Interaction: WBInteraction000112272
      WBInteraction000118973
      WBInteraction000125261
      WBInteraction000144066
      WBInteraction000148352
      WBInteraction000164043
      WBInteraction000168842
      WBInteraction000177298
      WBInteraction000187162
      WBInteraction000187861
      WBInteraction000188948
      WBInteraction000192863
      WBInteraction000202925
      WBInteraction000202932
      WBInteraction000205728
      WBInteraction000208732
      WBInteraction000211396
      WBInteraction000216417
      WBInteraction000216840
      WBInteraction000221755
      WBInteraction000226965
      WBInteraction000226984
      WBInteraction000235578
      WBInteraction000236760
      WBInteraction000239006
      WBInteraction000241841
      WBInteraction000244466
      WBInteraction000244717
      WBInteraction000245983
      WBInteraction000246413
      WBInteraction000248390
      WBInteraction000248425
      WBInteraction000250004
      WBInteraction000251739
      WBInteraction000251876
      WBInteraction000252225
      WBInteraction000259589
      WBInteraction000260241
      WBInteraction000263222
      WBInteraction000267084
      WBInteraction000267995
      WBInteraction000268604
      WBInteraction000272538
      WBInteraction000272646
      WBInteraction000275149
      WBInteraction000277091
      WBInteraction000279750
      WBInteraction000287379
      WBInteraction000289005
      WBInteraction000289074
      WBInteraction000291442
      WBInteraction000292796
      WBInteraction000295085
      WBInteraction000297797
      WBInteraction000304233
      WBInteraction000306353
      WBInteraction000307030
      WBInteraction000308642
      WBInteraction000313140
      WBInteraction000315465
      WBInteraction000320365
      WBInteraction000320657
      WBInteraction000323635
      WBInteraction000327763
      WBInteraction000331497
      WBInteraction000331523
      WBInteraction000335204
      WBInteraction000337598
      WBInteraction000341855
      WBInteraction000342733
      WBInteraction000348912
      WBInteraction000350090
      WBInteraction000352866
      WBInteraction000360514
      WBInteraction000360623
      WBInteraction000361299
      WBInteraction000362897
      WBInteraction000363754
      WBInteraction000366871
      WBInteraction000375955
      WBInteraction000375979
      WBInteraction000376239
      WBInteraction000376347
      WBInteraction000376540
      WBInteraction000382881
      WBInteraction000385114
      WBInteraction000386386
      WBInteraction000391042
      WBInteraction000397219
      WBInteraction000402910
      WBInteraction000410669
      WBInteraction000411521
      WBInteraction000416257
      WBInteraction000417583
      WBInteraction000419948
      WBInteraction000427470
      WBInteraction000428364
      WBInteraction000440892
      WBInteraction000441268
      WBInteraction000442956
      WBInteraction000447933
      WBInteraction000453983
      WBInteraction000460197
      WBInteraction000542402
      WBInteraction000555144
      WBInteraction000559964
      WBInteraction000564753
      WBInteraction000568805
      WBInteraction000569679
      WBInteraction000577984
      WBInteraction000578365
      WBInteraction000578426
      WBInteraction000583651
      WBInteraction000584011
  Map_info: Map: IV Position: 12.1804 Error: 0.002269
    Positive: Positive_clone: Y57G11A Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5181
        4393
        5531
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00031687
    WBPaper00046360
    WBPaper00059258
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene