WormBase Tree Display for Gene: WBGene00012980
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WBGene00012980 | SMap | S_parent | Sequence | Y48B6A | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | efhd-1 | Paper_evidence | WBPaper00041587 | |||
Sequence_name | Y48B6A.6 | ||||||
Molecular_name | Y48B6A.6a | ||||||
Y48B6A.6a.1 | |||||||
CE32970 | |||||||
Y48B6A.6b | |||||||
CE41852 | |||||||
Y48B6A.6c | |||||||
CE41853 | |||||||
Y48B6A.6a.2 | |||||||
Y48B6A.6b.1 | |||||||
Y48B6A.6c.1 | |||||||
Other_name | EFhd2 orthologue | Paper_evidence | WBPaper00038072 | ||||
CELE_Y48B6A.6 | Accession_evidence | NDB | BX284602 | ||||
Public_name | efhd-1 | ||||||
DB_info | Database | AceView | gene | 2O479 | |||
WormQTL | gene | WBGene00012980 | |||||
WormFlux | gene | WBGene00012980 | |||||
NDB | locus_tag | CELE_Y48B6A.6 | |||||
Panther | gene | CAEEL|WormBase=WBGene00012980|UniProtKB=Q9U2A6 | |||||
family | PTHR13025 | ||||||
NCBI | gene | 175073 | |||||
RefSeq | protein | NM_064560.7 | |||||
NM_182166.7 | |||||||
NM_001129185.5 | |||||||
TREEFAM | TREEFAM_ID | TF320736 | |||||
TrEMBL | UniProtAcc | Q8I0Z7 | |||||
A8XMZ5 | |||||||
Q9U2A6 | |||||||
UniProt_GCRP | UniProtAcc | Q9U2A6 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | efhd | ||||||
Allele (338) | |||||||
Strain | WBStrain00001460 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00005433 | ||||||
00119935 | |||||||
Ortholog (37) | |||||||
Structured_description | Concise_description | efhd-1 encodes the C. elegans ortholog of the mammalian EF hand domain-containing proteins EFHD1 and EFHD2; large-scale expression studies report that efhd-1 is expressed in the pharynx, the body wall muscle, and the nervous system. | Paper_evidence | WBPaper00031006 | |||
WBPaper00038072 | |||||||
WBPaper00041587 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 24 Nov 2014 00:00:00 | ||||||
Automated_description | Predicted to enable calcium ion binding activity. Is an ortholog of human EFHD1 (EF-hand domain family member D1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y48B6A.6a | |||||
Y48B6A.6b | |||||||
Y48B6A.6c | |||||||
Corresponding_CDS_history | Y48B6A.6:wp92 | ||||||
Y48B6A.6b:wp184 | |||||||
Corresponding_transcript | Y48B6A.6a.1 | ||||||
Y48B6A.6a.2 | |||||||
Y48B6A.6b.1 | |||||||
Y48B6A.6c.1 | |||||||
Other_sequence (40) | |||||||
Associated_feature | WBsf644832 | ||||||
WBsf658394 | |||||||
WBsf658395 | |||||||
WBsf990647 | |||||||
WBsf990648 | |||||||
WBsf1013792 | |||||||
WBsf222429 | |||||||
WBsf222430 | |||||||
Experimental_info | RNAi_result | WBRNAi00056884 | Inferred_automatically | RNAi_primary | |||
WBRNAi00037235 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00020738 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram1627 | ||||||
Expr7002 | |||||||
Expr1017855 | |||||||
Expr1035758 | |||||||
Expr1160336 | |||||||
Expr2011187 | |||||||
Expr2029423 | |||||||
Drives_construct | WBCnstr00002338 | ||||||
Microarray_results (30) | |||||||
Expression_cluster (218) | |||||||
Interaction (11) | |||||||
Map_info | Map | II | Position | 22.5653 | |||
Positive | Positive_clone | Y48B6A | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00038072 | ||||||
WBPaper00038491 | |||||||
WBPaper00041587 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |