WormBase Tree Display for Gene: WBGene00012980

WBGene00012980 SMap: S_parent: Sequence: Y48B6A
  Identity: Version: 2
    Name: CGC_name: efhd-1 Paper_evidence: WBPaper00041587
      Sequence_name: Y48B6A.6
      Molecular_name: Y48B6A.6a
        Y48B6A.6a.1
        CE32970
        Y48B6A.6b
        CE41852
        Y48B6A.6c
        CE41853
        Y48B6A.6a.2
        Y48B6A.6b.1
        Y48B6A.6c.1
      Other_name: EFhd2 orthologue Paper_evidence: WBPaper00038072
        CELE_Y48B6A.6 Accession_evidence: NDB BX284602
      Public_name: efhd-1
    DB_info: Database: AceView gene 2O479
        WormQTL gene WBGene00012980
        WormFlux gene WBGene00012980
        NDB locus_tag CELE_Y48B6A.6
        Panther gene CAEEL|WormBase=WBGene00012980|UniProtKB=Q9U2A6
          family PTHR13025
        NCBI gene 175073
        RefSeq protein NM_064560.7
            NM_182166.7
            NM_001129185.5
        TREEFAM TREEFAM_ID TF320736
        TrEMBL UniProtAcc Q8I0Z7
            A8XMZ5
            Q9U2A6
        UniProt_GCRP UniProtAcc Q9U2A6
    Species: Caenorhabditis elegans
    History: Version_change (2)
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: efhd
    Allele (338)
    Strain: WBStrain00001460
    RNASeq_FPKM (74)
    GO_annotation: 00005433
      00119935
    Ortholog: WBGene00146632 Caenorhabditis brenneri From_analysis: OMA
      WBGene00025804 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00053627 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
      WBGene00213240 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00195141 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00152741 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00226899 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6470 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10050 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g7363 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5658 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12382 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP32.g17286 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g14026 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g17411 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6311 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00006.g523 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g5949 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g9745 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01996.g24283 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_10456 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005285 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08803 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_20324000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g6497 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247020 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00117789 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00285188 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0032731 Drosophila melanogaster From_analysis: OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-030131-7461 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-060531-152 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:28670 Homo sapiens From_analysis: OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:29556 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:106504 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1921607 Mus musculus From_analysis: OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1307585 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1559565 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Structured_description: Concise_description: efhd-1 encodes the C. elegans ortholog of the mammalian EF hand domain-containing proteins EFHD1 and EFHD2; large-scale expression studies report that efhd-1 is expressed in the pharynx, the body wall muscle, and the nervous system. Paper_evidence: WBPaper00031006
            WBPaper00038072
            WBPaper00041587
          Curator_confirmed: WBPerson1843
          Date_last_updated: 24 Nov 2014 00:00:00
      Automated_description: Predicted to enable calcium ion binding activity. Is an ortholog of human EFHD1 (EF-hand domain family member D1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y48B6A.6a
      Y48B6A.6b
      Y48B6A.6c
    Corresponding_CDS_history: Y48B6A.6:wp92
      Y48B6A.6b:wp184
    Corresponding_transcript: Y48B6A.6a.1
      Y48B6A.6a.2
      Y48B6A.6b.1
      Y48B6A.6c.1
    Other_sequence (40)
    Associated_feature: WBsf644832
      WBsf658394
      WBsf658395
      WBsf990647
      WBsf990648
      WBsf1013792
      WBsf222429
      WBsf222430
  Experimental_info: RNAi_result: WBRNAi00056884 Inferred_automatically: RNAi_primary
      WBRNAi00037235 Inferred_automatically: RNAi_primary
      WBRNAi00020738 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1627
      Expr7002
      Expr1017855
      Expr1035758
      Expr1160336
      Expr2011187
      Expr2029423
    Drives_construct: WBCnstr00002338
    Microarray_results (30)
    Expression_cluster (218)
    Interaction (11)
  Map_info: Map: II Position: 22.5653
    Positive: Positive_clone: Y48B6A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038072
    WBPaper00038491
    WBPaper00041587
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene