WormBase Tree Display for Gene: WBGene00012930
expand all nodes | collapse all nodes | view schema
| WBGene00012930 | SMap | S_parent | Sequence | Y47D3A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | obr-1 | Person_evidence | WBPerson1105 | |||||
| Sequence_name | Y47D3A.17 | ||||||||
| Molecular_name (18) | |||||||||
| Other_name | CELE_Y47D3A.17 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | obr-1 | ||||||||
| DB_info | Database | AceView | gene | 3M348 | |||||
| WormQTL | gene | WBGene00012930 | |||||||
| WormFlux | gene | WBGene00012930 | |||||||
| NDB | locus_tag | CELE_Y47D3A.17 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012930|UniProtKB=A7DTF2 | |||||||
| family | PTHR10972 | ||||||||
| NCBI | gene | 176555 | |||||||
| RefSeq | protein | NM_001379929.1 | |||||||
| NM_001129258.5 | |||||||||
| NM_001379928.1 | |||||||||
| NM_001392212.1 | |||||||||
| NM_067047.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF320922 | |||||||
| TrEMBL | UniProtAcc | A7DTF3 | |||||||
| Q95Q23 | |||||||||
| Q9U2C7 | |||||||||
| A7DTF2 | |||||||||
| G2HK04 | |||||||||
| UniProt_GCRP | UniProtAcc | A7DTF2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Jul 2004 16:55:44 | WBPerson1971 | Name_change | CGC_name | obr-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | obr | ||||||||
| Allele (310) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005088 | ||||||||
| 00005089 | |||||||||
| 00005090 | |||||||||
| 00005091 | |||||||||
| 00005092 | |||||||||
| 00005093 | |||||||||
| 00005094 | |||||||||
| 00005095 | |||||||||
| 00008939 | |||||||||
| 00119900 | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00008832 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00016331 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00014215 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable sterol binding activity and sterol transporter activity. Predicted to be involved in sterol transport. Predicted to be located in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Human ortholog(s) of this gene implicated in cholangiocarcinoma and colorectal cancer. Is an ortholog of human OSBP (oxysterol binding protein) and OSBP2 (oxysterol binding protein 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:4947 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8504) | ||||
| DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8503) | ||||||
| Molecular_info | Corresponding_CDS | Y47D3A.17a | |||||||
| Y47D3A.17b | |||||||||
| Y47D3A.17c | |||||||||
| Y47D3A.17d | |||||||||
| Y47D3A.17e | |||||||||
| Corresponding_CDS_history | Y47D3A.17:wp20 | ||||||||
| Corresponding_transcript | Y47D3A.17a.1 | ||||||||
| Y47D3A.17b.1 | |||||||||
| Y47D3A.17b.2 | |||||||||
| Y47D3A.17b.3 | |||||||||
| Y47D3A.17b.4 | |||||||||
| Y47D3A.17c.1 | |||||||||
| Y47D3A.17d.1 | |||||||||
| Y47D3A.17e.1 | |||||||||
| Other_sequence (51) | |||||||||
| Associated_feature | WBsf651499 | ||||||||
| WBsf667431 | |||||||||
| WBsf667432 | |||||||||
| WBsf667433 | |||||||||
| WBsf994322 | |||||||||
| WBsf994323 | |||||||||
| WBsf994324 | |||||||||
| WBsf1015961 | |||||||||
| WBsf1015962 | |||||||||
| WBsf227560 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037156 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00088748 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020700 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00088641 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056739 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020699 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001053 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091935 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056738 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056737 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020877 | ||||||||
| Expr1035727 | |||||||||
| Expr1160203 | |||||||||
| Expr2014591 | |||||||||
| Expr2032824 | |||||||||
| Microarray_results (33) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | III | Position | 8.18707 | Error | 0.038673 | |||
| Positive | Positive_clone | Y47D3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010145 | ||||||||
| WBPaper00030935 | |||||||||
| WBPaper00031877 | |||||||||
| WBPaper00036600 | |||||||||
| WBPaper00036763 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038615 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
