WormBase Tree Display for Gene: WBGene00012907
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| WBGene00012907 | SMap | S_parent | Sequence | Y46G5A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cpt-1 | Person_evidence | WBPerson3206 | |||||
| WBPerson3205 | |||||||||
| Sequence_name | Y46G5A.17 | ||||||||
| Molecular_name | Y46G5A.17 | ||||||||
| Y46G5A.17.1 | |||||||||
| CE36414 | |||||||||
| Y46G5A.17.2 | |||||||||
| Other_name | CELE_Y46G5A.17 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | cpt-1 | ||||||||
| DB_info | Database | AceView | gene | 2N80 | |||||
| WormQTL | gene | WBGene00012907 | |||||||
| WormFlux | gene | WBGene00012907 | |||||||
| NDB | locus_tag | CELE_Y46G5A.17 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012907|UniProtKB=Q9U2F2 | |||||||
| family | PTHR22589 | ||||||||
| NCBI | gene | 174912 | |||||||
| RefSeq | protein | NM_064320.6 | |||||||
| TrEMBL | UniProtAcc | Q9U2F2 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U2F2 | |||||||
| OMIM | gene | 600528 | |||||||
| 608846 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | cpt-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cpt | ||||||||
| Allele (342) | |||||||||
| Strain | WBStrain00001343 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP2721 | ||||||||
| Ortholog (60) | |||||||||
| Paralog | WBGene00000481 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007175 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00008629 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009622 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00011122 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00011850 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021002 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020911 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021703 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019644 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | Y46G5A.17 is orthologous to the human gene SIMILAR TO CARNITINE PALMITOYLTRANSFERASE I, LIVER (CPT1A; OMIM:600528), which when mutated leads to disease. | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 06 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable carnitine O-palmitoyltransferase activity. Predicted to be involved in carnitine metabolic process and fatty acid metabolic process. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in carnitine palmitoyltransferase I deficiency; hereditary spastic paraplegia 73; and lymphangioleiomyomatosis. Is an ortholog of human CPT1A (carnitine palmitoyltransferase 1A) and CPT1C (carnitine palmitoyltransferase 1C). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110818 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18540) | ||||
| DOID:0090129 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2328) | ||||||
| DOID:3319 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2328) | ||||||
| DOID:3146 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2328) | ||||||
| Molecular_info | Corresponding_CDS | Y46G5A.17 | |||||||
| Corresponding_CDS_history | Y46G5A.17:wp52 | ||||||||
| Y46G5A.17:wp119 | |||||||||
| Corresponding_transcript | Y46G5A.17.1 | ||||||||
| Y46G5A.17.2 | |||||||||
| Other_sequence (115) | |||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056674 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00000348 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1623 | ||||||||
| Expr6984 | |||||||||
| Expr1011554 | |||||||||
| Expr1035713 | |||||||||
| Expr1160145 | |||||||||
| Expr2010514 | |||||||||
| Expr2028754 | |||||||||
| Drives_construct | WBCnstr00002236 | ||||||||
| WBCnstr00029794 | |||||||||
| Construct_product | WBCnstr00029794 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (151) | |||||||||
| Interaction | WBInteraction000558548 | ||||||||
| WBInteraction000563740 | |||||||||
| WBInteraction000579824 | |||||||||
| WBInteraction000585689 | |||||||||
| Map_info | Map | II | Position | 11.205 | Error | 0.026807 | |||
| Positive | Positive_clone | Y46G5A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
