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WormBase Tree Display for Gene: WBGene00012822

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Name Class

WBGene00012822SMapS_parentSequenceY43F8B
IdentityVersion1
NameSequence_nameY43F8B.12
Molecular_nameY43F8B.12
Y43F8B.12.1
CE44267
Other_nameCELE_Y43F8B.12Accession_evidenceNDBBX284605
Public_nameY43F8B.12
DB_infoDatabaseAceViewgene5T943
WormQTLgeneWBGene00012822
WormFluxgeneWBGene00012822
NDBlocus_tagCELE_Y43F8B.12
PanthergeneCAEEL|WormBase=WBGene00012822|UniProtKB=Q9XWX0
familyPTHR21516
NCBIgene189875
RefSeqproteinNM_075386.2
TrEMBLUniProtAccQ9XWX0
UniProt_GCRPUniProtAccQ9XWX0
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (31)
RNASeq_FPKM (74)
Paralog (31)
Structured_descriptionAutomated_descriptionEnriched in intestine based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; skn-1; and glp-1 based on microarray and RNA-seq studies. Is affected by ten chemicals including Tunicamycin; bisphenol S; and Rifampin based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_info (3)
Experimental_infoRNAi_resultWBRNAi00065327Inferred_automaticallyRNAi_primary
WBRNAi00056505Inferred_automaticallyRNAi_primary
WBRNAi00020551Inferred_automaticallyRNAi_primary
WBRNAi00037054Inferred_automaticallyRNAi_primary
Expr_patternExpr1018817
Expr1159972
Expr2025734
Drives_constructWBCnstr00029825
Construct_productWBCnstr00029825
Microarray_results (14)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038168:lin-35_upregulated
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045257:bar-1(ga80)_upregulated
WBPaper00045316:prg-1_upregulated_L2
WBPaper00045401:N.parisii_8h_upregulated
WBPaper00045934:wrn-1(gk99)_downregulated
WBPaper00045971:tunicamycin_upregulated_RtcB(null)
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049954:BPS_downregulated
WBPaper00050121:mir-60(n4947)_upregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050504:hrp-2(RNAi)_upregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051137:N.parisii-virus_upregulated_N2
WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053402:his-3(RNAi)_upregulated
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
WBPaper00053909:N2_vs_CB4856_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056167:Cry5B_downregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00057041:spc-1(cas971)_downregulated
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057068:Cadmium_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059191:hsp-16.2p-LIN-29_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061319:pnp-1(jy90)_upregulated
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061527:C17H1.6-C17H1.13
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061613:human-amyloid-beta_downregulated
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062193:daf-16(RNAi)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
WBPaper00062347:blmp-1(tm548)_upregulated
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062491:sma-3(wk30)_upregulated
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064939:vit-5(RNAi)_upregulated
WBPaper00065029:cadmium_upregulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065086:N2_N.ironsii_regulated
WBPaper00065086:N2_N.parisii_regulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065158:AFD_depleted
WBPaper00065734:unc-25(e156)_upregulated
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4489_group_21
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00027111:rrf-1(pk1417)_upregulated
WBPaper00027111:rrf-2(ok210)_upregulated
WBPaper00030985:Erwinia_carotovora_downregulated
WBPaper00035227:heat_shock_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_regulated_old
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00045960:L4-lethargus_upregulated
WBPaper00053236:Starvation_regulated_GR1307
InteractionWBInteraction000332219
WBInteraction000385846
WBInteraction000452109
Map_infoPositivePositive_cloneY43F8BInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV21.9643
MethodGene