WormBase Tree Display for Gene: WBGene00012692
expand all nodes | collapse all nodes | view schema
| WBGene00012692 | SMap | S_parent | Sequence | Y39B6A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y39B6A.33 | |||||||
| Molecular_name | Y39B6A.33 | ||||||||
| Y39B6A.33.1 | |||||||||
| CE21690 | |||||||||
| Other_name | Y39B6B.o | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y39B6.33 | Paper_evidence | WBPaper00044885 | |||||||
| CELE_Y39B6A.33 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | Y39B6A.33 | ||||||||
| DB_info | Database | AceView | gene | 5T479 | |||||
| WormQTL | gene | WBGene00012692 | |||||||
| WormFlux | gene | WBGene00012692 | |||||||
| NDB | locus_tag | CELE_Y39B6A.33 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012692|UniProtKB=Q9NEU5 | |||||||
| family | PTHR14211 | ||||||||
| NCBI | gene | 180246 | |||||||
| RefSeq | protein | NM_001380869.2 | |||||||
| SwissProt | UniProtAcc | Q9NEU5 | |||||||
| TREEFAM | TREEFAM_ID | TF313004 | |||||||
| UniProt_GCRP | UniProtAcc | Q9NEU5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (91) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP5480 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Concise_description | Y39B6A.33 encodes the C. elegans ortholog of mammalian GLTSCR2/PICT1 (GLioma Tumor Suppressor Candidate Region gene 2/Protein Interacting with the C Terminus-1); loss of Y39B6A.33 activity via RNAi results in lower oxygen consumption rates, suggesting that Y39B6A.33 plays a role in positively regulating mitochondrial respiration rates; in body wall muscle cells, Y39B6A.33 localizes to the nucleolus. | Paper_evidence | WBPaper00044885 | |||||
| WBPaper00038444 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 03 Apr 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable 5S rRNA binding activity. Involved in positive regulation of cellular respiration. Located in nucleolus. Is an ortholog of human NOP53 (NOP53 ribosome biogenesis factor). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y39B6A.33 | |||||||
| Corresponding_transcript | Y39B6A.33.1 | ||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf662209 | ||||||||
| WBsf1003082 | |||||||||
| WBsf1021608 | |||||||||
| WBsf1021609 | |||||||||
| WBsf233181 | |||||||||
| WBsf233182 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00071609 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00106734 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009313 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036923 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113964 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056190 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026664 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071837 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094100 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106938 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9472 | ||||||||
| Expr1025039 | |||||||||
| Expr1035610 | |||||||||
| Expr1159689 | |||||||||
| Expr2007369 | |||||||||
| Expr2025604 | |||||||||
| Construct_product | WBCnstr00014037 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (114) | |||||||||
| SAGE_tag | SAGE:tcacacttcc | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:ctcctgtgtg | Strand | Antisense | |||||||
| SAGE:ataaaaaataacgaatt | Strand | Antisense | |||||||
| SAGE:ataaaaaata | Strand | Antisense | |||||||
| SAGE:aaaaactgtttttctga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aaaaactgtt | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tcacacttccaaaacca | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (177) | |||||||||
| Map_info | Positive | Positive_clone | Y39B6A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 18.4915 | |||||||
| Reference | WBPaper00038444 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044885 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
